Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06304 ATGGTAAAAGCAATAGTATCTGTGCTGTTGATTTCCTCTATTGTTTTGTGTGTGTCTGCGACGGATAATGGATTTCCGAGATGTAATTGCGACGATGAGGCTAGTTTGTGGACTATTGAGAGCATTTTGGAGTGTCAAAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTTTCGATCCCGATTGAGTTGCTTTATTTTGTCAGTTGCTCGAACGTCCCTTTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATCGTACTATGTGGGTTGACTCATTTGTTGAATGGTTGGACTTATGGTCCTCACACTTTTCAGCTTATGGTGGCACTGACTATCTTTAAGATTCTCACTGCGTTGGTGTCTTGTGCTACTGCGATAACACTTGTCACTTTGATTCCTTTACTTCTCAAAGTGAAGGTCAGGGAATTTATGCTCAAGAAAAAGACATGGGATCTTGGACGGGAGGTTGGTCTTATTATGAAGCAAAAGGAGGCTGCAGTGCACGTAAGAATGCTTACTCAAGAGATTCGTAAGTCACTCGATAGACATACGATTCTGTATACCACTTTGGTGGAGCTTTCGAAGACGCTAGGCTTGCAGAACTGTGCTGTGTGGATGCCTAATGAAGAAAAGACAGTGATGAATCTCACTCATGAATTGAACGGAAGGAATTTAAATATTTCTATACCGATTACTGATTTGGATGTTGTAAGAATTAAGGGAAGCAGTGTAGTGAATATTCTTAGTTCTGACTCAGCGCTTGCTGTTTCCAGTTGTGCAAATTCTGGTGATGCAGGACCGGTTGCTGCAATCCGAATGCCAATGTTACGGGTTTGTAATTTCAAAGGAGGAACACCTGAGCTAACTCAGGCGTGTTATGCAATACTGGTCTTGATTCTTCCCGCCGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAAGTTGCTGTAGCTCTATCACATGCTGCAATTCTCGAAGAGTCTCAACTTATGAGAGAAAAGTTGGAGGAACGCAATCGAGCTTTGCAACAGGCGAGAAGGAACGCTATGATGGCAAGCCAGGCAAGAAACTCGTTTCAGAAAGTCATGAGCGATGGCATGAGGAGGCCTATGCACTCAATTTTAGGATTGCTTTCAATGATACAAGACGACAGTTTAAAGAATGAACAGAAACTTATTGTGGATGCAATGCTAAGGACGAGCAATGTGCTATCGAACTTGATAAATGATGCCATGGACAGCTCTGCAAAGGACGATGGAAGATTTCCTTTGGAAATAAGGTCTTTCGGGTTACATTCCATGATAAAAGAAGCAGCTTGCCTTGCCAAATGCATGTGTGTTTATAAGGGCTTGGGTTTTATCGTTGAGGTTGATAAGTCTTTACCAAACAATGTTATGGGTGATGAGAGGAGAGTTTTCCAGGTGATTTTGCATATGGTTGGGAATCTACTCGATTGCAACCATGGAGAAGGAGGGATCCTTGTATTCCGGGTTTCGGCAGATGCTGGAAGTCAAGGGAGGAATGAGAAAGGATGGACAACCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCACCACCGGTAGCGATTCCGAAGTTGGAAGCTCCGTTTCCTCTGGACCCGGTGGTAGGACATATACCAGTGATAGGTATGAGGGCAGATTGAGCTTTAGTATTTGCAAGAGGATTGTCCAGTTGATGCAAGGGAACTTATGGTTGGTACCATACACTCATGGCATTCCTCAAAGCATGACACTTCTTCTCCGGTTTCAACTACGACCGTCCATTGCAATAGCCATCTCCGAACCCAGCGAATCATCAGAACGCACATACTCCAATTCAATGCTGAGAGGTCTGCAAGTTCTATTAGTCGACAACGACGATGTAAATAGAGCAGTCACACAAAAACTGCTTCAGAAACTCGGCTGTTCCGTCACTTCCGCTTCTACAGGATTCGAATGCCTCACTCTCATCGGCCCCGTCGGATCCTCCATCCAAGTCATTCTCTTGGATCTCCAAACACCTGACATAGACGGCTTCGAAGTCGCCGCAAGGATCCGGAAGTTCAAAAGCGGAAACAGACCCATAATTATCGCGTTAACAGCAAGCGCAGAAGAAGATCTCTGGGAAAGATGTATGCAGATTGGCGTCAACGGAGTAATCCGAAAACCGGTTTTGTTGCAAGGAATCGCAAGTGAACTCAGAAGAATCCTCATGCAGGGAAATATATAG 2280 0.4425 MVKAIVSVLLISSIVLCVSATDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTIFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGLIMKQKEAAVHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNEEKTVMNLTHELNGRNLNISIPITDLDVVRIKGSSVVNILSSDSALAVSSCANSGDAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPAGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQQARRNAMMASQARNSFQKVMSDGMRRPMHSILGLLSMIQDDSLKNEQKLIVDAMLRTSNVLSNLINDAMDSSAKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYKGLGFIVEVDKSLPNNVMGDERRVFQVILHMVGNLLDCNHGEGGILVFRVSADAGSQGRNEKGWTTWRPSSSSGDVNIRFEIGITTGSDSEVGSSVSSGPGGRTYTSDRYEGRLSFSICKRIVQLMQGNLWLVPYTHGIPQSMTLLLRFQLRPSIAIAISEPSESSERTYSNSMLRGLQVLLVDNDDVNRAVTQKLLQKLGCSVTSASTGFECLTLIGPVGSSIQVILLDLQTPDIDGFEVAARIRKFKSGNRPIIIALTASAEEDLWERCMQIGVNGVIRKPVLLQGIASELRRILMQGNI 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06304 759 Pfam Response regulator receiver domain 637 744 IPR001789 GO:0000160
Vivi1g06304 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vivi1g06304 759 Coils Coil 334 361 - -
Vivi1g06304 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 756 - -
Vivi1g06304 759 SUPERFAMILY CheY-like 632 754 IPR011006 -
Vivi1g06304 759 FunFam Ethylene receptor 4 331 425 - -
Vivi1g06304 759 Gene3D - 635 758 - -
Vivi1g06304 759 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Vivi1g06304 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vivi1g06304 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vivi1g06304 759 SMART REC_2 635 754 IPR001789 GO:0000160
Vivi1g06304 759 Gene3D - 428 607 IPR036890 -
Vivi1g06304 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Vivi1g06304 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 592 IPR036890 -
Vivi1g06304 759 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
Vivi1g06304 759 Pfam His Kinase A (phospho-acceptor) domain 365 428 IPR003661 GO:0000155|GO:0007165
Vivi1g06304 759 SUPERFAMILY GAF domain-like 185 331 - -
Vivi1g06304 759 Gene3D - 162 329 IPR029016 -
Vivi1g06304 759 CDD REC_ETR-like 635 750 - -
Vivi1g06304 759 Gene3D - 330 427 - -
Vivi1g06304 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 604 - -
Vivi1g06304 759 SMART gaf_1 182 338 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06304 Vivi-Chr1 142384866 142388983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06304 22 754 Miscellaneous Gene Families AT3G04580 57.987 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g06304 HATPase_c 7.1e-06 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06304 K14509 - gmx:100787425 1263.06