Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06300 TCAGAAATATATACTACAGCAGCAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGTGTTGACCCAGGAACCCATTCACCTACTGGTTTCAACAAACTTCACAACACAAACCTTACGATCAACGAGAATCGCGATGAAGAAGAAGAAGACGACGATGACAACAGAGATGAGCCGAGAGAAGGCGCGGTTGATGTTGGAAACCGGAGGCCAAGAGGAAGACCACCTGGATCTAAAAATAGACCTAAACCTCCTATCTTTGTTACAAGAGATAGTCCAAATGCTTTGAAGAGCCATGTGATGGAGGTGGCTGGTGGAGCTGATATAGCAGAAAGTGTAGCGCAATTTGCAAGGAGGCGTCAACGGGGTGTTTGTGTTCTCAGTGGAAGTGGCTCGGTGGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTTCATGGTAGGTTTGAGATCTTGTCCTTAACGGGAACGTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTAACAGTGTACCTGGCTGGAGGTCAGGGCCAGGTAGTCGGAGGTTGTGTTGTTGGAGCTCTTGTTGCAGTTGGGCCTGTTATGCTTATTTCCGCTACTTTTACTAACGCGACTTATGAAAGACTTCCACTCGAAGATTCTGATAATGATAATGACAATAACAACGAAGGGCCTAGTTCAGCGGCCGCCATGCAAGGAGCAGCGTTAGGTGGTGGATCTCCTCCACCCGGAATCGGTCATCAGTTGCAAGGTGGAATTCCAGATCCATCTTCTATGCCGATGTATAATTTGCCACCGAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCCCTTGCTTGGGCTGCTGCTCATGGAAGGCCACCTTATTAA 909 0.4807 SEIYTTAAVLANPWWTIQGGLSGVDPGTHSPTGFNKLHNTNLTINENRDEEEEDDDDNRDEPREGAVDVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGALVAVGPVMLISATFTNATYERLPLEDSDNDNDNNNEGPSSAAAMQGAALGGGSPPPGIGHQLQGGIPDPSSMPMYNLPPNLLPNNGGQMGHEALAWAAAHGRPPY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06300 302 Gene3D - 100 228 - -
Vivi1g06300 302 MobiDBLite consensus disorder prediction 47 61 - -
Vivi1g06300 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Vivi1g06300 302 FunFam AT-hook motif nuclear-localized protein 99 227 - -
Vivi1g06300 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 297 IPR014476 GO:0003680
Vivi1g06300 302 CDD DUF296 100 183 IPR005175 -
Vivi1g06300 302 ProSiteProfiles PPC domain profile profile. 96 236 IPR005175 -
Vivi1g06300 302 MobiDBLite consensus disorder prediction 26 95 - -
Vivi1g06300 302 MobiDBLite consensus disorder prediction 26 42 - -
Vivi1g06300 302 MobiDBLite consensus disorder prediction 220 276 - -
Vivi1g06300 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 212 IPR005175 -
Vivi1g06300 302 PIRSF ESCAROLA 18 302 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06300 Vivi-Chr1 142289649 142290783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06300 10 302 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.532 5.12e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06300 - - var:108341460 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06300 1 142289649 142290783 Vivi1g06300 1 142289649 142290783 ECH