Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06284 ATGGATCTTGTTAGTAGAAGATTCTTGATCCATTTTTCACAACATGGTTCAGATTCACAGTCACATTCACAACTACAAGCGATTTCTCCAACAAGTTCATCGAGTTCGATTTTTCATCCTCATATGCATCATTCCAGCACAAGTTTTCCAATAATAGCAATCGCTATAATCGGAATATTAGCAACAGCCTTCTTGCTTGTTTCCTACTACATCTTCGTCATCAAATGTTGTCTCAATTGGCACCGTATCGATCTTCTACGACGTTTCTCACCTTCTCGAAGACGACAAGATCCGACTACTGCGTACTCGCCGAGTACAGAGCCTCGCGGCCTAGACGAGGCCGTGATTAGGCTAATCCCAGTGATTCAATTCAAAACAGAAGAGGAGAACAGAGATTCTTCCGAATGTGCTGTTTGTTTGAACGATTTTCAACAGGATGAGAAACTTCGGATTATACCGAATTGTAACCATGTTTTTCACATTGATTGCATTGATGTTTGGTTACAAAACAATGCTAATTGTCCACTTTGTAGAACAAGTATTTCTTTGACAAAAAGATACCATTTTGATCAAATGCTTCAACAAAGTCCATTTTCAGTTTCATCTCAAGATCAAAATCAACATGATGATGAAGATTTTGTTGTGATTGAATTGAGTAACAATGATGCAATAGAGTTACCATTATCATTACCATTACCATTACCATTACCGTTACCATTACCAAGAGCGAGTTCGATTAGTCCTTCGCCGAGAAAAAGTCGAAAAAAATTGCATAAAGTTACAAGTATGGGAGATGAATGCATTGATATTAGAGCAACAAAAGATGAACAATTTTCAGTTCAACCAATTAGAAGATCTTTTTCAATGGATTCATCAGGGGATAGGCAGTTTTATCTTGCAGTTCAAGAAGCTCTGCATCAGCAAAAGAGGGGTGTCAATGAAGTTAACAGCTCCATTGAAGGGTGCAGTGGTGGTGGAAGTGGTGGTTGTGGTGGTGGTGGTGGTGGTGGAAGTGGAAGAGTGAAGAAATCATTTTTTTTATTTGGATATGGAAGTAGATCTAGAAGTTCTGTTCAACCTGTGCATTTAGATTCTTGA 1098 0.3852 MDLVSRRFLIHFSQHGSDSQSHSQLQAISPTSSSSSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTAYSPSTEPRGLDEAVIRLIPVIQFKTEEENRDSSECAVCLNDFQQDEKLRIIPNCNHVFHIDCIDVWLQNNANCPLCRTSISLTKRYHFDQMLQQSPFSVSSQDQNQHDDEDFVVIELSNNDAIELPLSLPLPLPLPLPLPRASSISPSPRKSRKKLHKVTSMGDECIDIRATKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALHQQKRGVNEVNSSIEGCSGGGSGGCGGGGGGGSGRVKKSFFLFGYGSRSRSSVQPVHLDS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06284 365 FunFam E3 ubiquitin-protein ligase ATL6 99 184 - -
Vivi1g06284 365 SMART ring_2 136 177 IPR001841 -
Vivi1g06284 365 PANTHER RING-H2 FINGER PROTEIN ATL16 31 361 IPR044600 GO:0016567|GO:0016740
Vivi1g06284 365 Pfam Ring finger domain 135 178 IPR001841 -
Vivi1g06284 365 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Vivi1g06284 365 CDD RING-H2_EL5-like 135 178 - -
Vivi1g06284 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 187 IPR013083 -
Vivi1g06284 365 SUPERFAMILY RING/U-box 127 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06284 Vivi-Chr1 141819850 141821558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06284 40 312 C3H Transcription Factor Family AT1G04360 51.290 8.88e-91 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06284 1 141819850 141821558 Vivi1g06284 1 141819850 141821558 ECH