Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06281 ATGAATAAAGATGAATCAAAGGGAAGGACCAACAATGATGGCGGAAATGTCCGATACCGAGGCGTCCGCTGTCGACCGTGGGGGAAGTTTGCGGCCGAGATTCGCGACTCGAACAGGCAGGGTCAGAGGGTGTGGCTAGGAACATTCAACACTGCTGAGGAAGCTGCTAGAGCTTATGATAGAGCTGCTTATGATATGAGAGGTTCATTTGCAATCCTTAATTTCCCACATGAATACAATATGGGTGCCGGTTCGGGATCAGGTTCCGGTGCCGCTTCTTCTTCCTCTTCAAGGAATGCAAATGTGGATGGCAGAGGAAGACAAGTGTTTGAATTTGAGTACTTAGATGATAAGTTGCTGGAGGAGCTTCTTGATTTTGAAGAGAAGAAAAAATAA 396 0.4646 MNKDESKGRTNNDGGNVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTAEEAARAYDRAAYDMRGSFAILNFPHEYNMGAGSGSGSGAASSSSSRNANVDGRGRQVFEFEYLDDKLLEELLDFEEKKK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06281 131 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vivi1g06281 131 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vivi1g06281 131 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vivi1g06281 131 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vivi1g06281 131 MobiDBLite consensus disorder prediction 83 102 - -
Vivi1g06281 131 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vivi1g06281 131 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vivi1g06281 131 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Vivi1g06281 131 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Vivi1g06281 131 MobiDBLite consensus disorder prediction 86 102 - -
Vivi1g06281 131 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vivi1g06281 131 PANTHER DNA-BINDING DOMAIN 12 127 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06281 Vivi-Chr1 141633962 141634786 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06281 13 131 AP2-EREBP Transcription Factor Family AT3G23230 61.905 2.59e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g06281 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06281 - - vvo:131618321 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06281 1 141633962 141634786 Vivi1g06281 1 141633962 141634786 ECH