Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06270 ATGAACTCAACTCCAAACCCTTCCTCTTCATTCGAATTCAATTATCTCCCCTTCAACGAAAACGACCCCGAAGAGATGCTTCTCTACGGCATGATCAACGACGCAAACACCTCCCTCACCAACACCAGAGTTAAAGAAGAAGAGGTAAGTTCCATAAGTTCCGAAGAGAACGAGCCGCGGAAGGAGAAATCCTACCGCGGCGTTCGAAGAAGGCCATGGGGGAAATTCGCCGCCGAAATAAGGGATTCAACGAGAAACGGAATGAGGGTTTGGTTAGGAACATTTGACAGTGCTGAAGCAGCTGCTTTAGCGTATGATCAAGCTGCTTTTGCCATGAGAGGTGCTTCTGCTATACTCAATTTTCCTGTGGAGATTGTGAGAGAATCGCTTAATGATATGAATTGCGATGAATGTTCTGAAGATGGTTGTTCTCCGGTTGTTGCTCTTAAGAGGAAACATTCTTTGAGGAGGAAAATCGGGTTCGCGAAGAACAAAGAACAAGATTTTAGAAACAAGAACAACAGTAATAACAATAATAACAGTGTTGATAATTCTGTCGTGTTTGAAGATCTTGGTTCTGATTATTTGGAGCAATTGTTGATGTCTTCTGATGAATTTCCTTCTCCTCAGTGA 633 0.4297 MNSTPNPSSSFEFNYLPFNENDPEEMLLYGMINDANTSLTNTRVKEEEVSSISSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFAMRGASAILNFPVEIVRESLNDMNCDECSEDGCSPVVALKRKHSLRRKIGFAKNKEQDFRNKNNSNNNNNSVDNSVVFEDLGSDYLEQLLMSSDEFPSPQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06270 210 MobiDBLite consensus disorder prediction 42 65 - -
Vivi1g06270 210 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
Vivi1g06270 210 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vivi1g06270 210 FunFam Ethylene-responsive transcription factor 2 63 124 - -
Vivi1g06270 210 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
Vivi1g06270 210 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vivi1g06270 210 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Vivi1g06270 210 MobiDBLite consensus disorder prediction 48 65 - -
Vivi1g06270 210 Gene3D AP2/ERF domain 63 124 IPR036955 GO:0003700|GO:0006355
Vivi1g06270 210 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Vivi1g06270 210 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Vivi1g06270 210 PANTHER DNA-BINDING DOMAIN 46 201 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06270 Vivi-Chr1 140763673 140765103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06270 16 204 AP2-EREBP Transcription Factor Family AT3G23240 60.000 1.36e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06270 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06270 K14516 - gmx:100790598 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06594 1 152172491 152173171 Vivi1g06270 1 140763673 140765103 ECH
Vivi1g06270 1 140763673 140765103 Vivi1g06270 1 140763673 140765103 ECH