Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06259 ATGGAACGTGGTGTTGTTGATGGTATTATCAATAGGTTGCTTGAAGTAAGAGCAAGACCAGGGAAACAGGTGCAGCTTTCTGAGGCTGAAATCAAACAGCTTTGTCTTGTTTCTAAGGATATTTTCTTGAATCAGCCGAATCTGTTGAAATTAGAGGCACCTATTAAGATCTGTGGGGATGTCCATGGTCAATATCCTGACCTTCTGCGGATTTTCGAGTACGGTGGATTGCCTCCTCGTTCCAATTATTTATTTCTAGGAGACTATGTTGATCGCGGAAAGCAAAGTCTAGAAACAATATGTCTTCTTCTGGCATATAAAATAAAATACCCTCGAAACTTCTTCCTTCTAAGGGGTAACCACGAATGCGCTTCCATAAACCGTGTCTACGGATTTTACGACGAGTGCAAAAGGAGATACAATGTGAAGCTATGGAAAACATTTACAGATTGTTTCAACTGTTTGCCCGTGGCAGCTCTTATTGACGAAAAGATTATCTGTATGCACGGTGGACTCTCTCCTGAACTAAACAATTTGAATCAGATAAAGAATTTGCAACGTCCGTGTGAAGTTCCTGAATCCGGTCTATTATGTGATCTCCTATGGTCTGATCCTAGTAGCGATGTTCAAGGCTGGGGAGAAAGTGAACGCGGAGTTTCTTATACGTTTGGCGCTGATAGGGTTAAAGAGTTTCTTCAAAAGCATGATCTTGATTTGATTTGCAGGGCTCATCAGGTTGTGGAAGATGGATATGAGTTCTTTGCTAATAGACAACTTGTAACAATCTTTTCAGCGCCGAATTACTGCGGAGAGTTTGATAATGCTGGTGCTATGATGTCTGTTAATGAAACACTTATGTGTTCTTTTCAAATACTAAAGCCACATGATAAAAAGCCGAAGTTTACCTTTGGAAGCACAACTACTGTTAAGCCTGGTACTCCAACAAATTTCAAGCAAACACTTTTTGGCGCTAAATCATGA 981 0.4047 MERGVVDGIINRLLEVRARPGKQVQLSEAEIKQLCLVSKDIFLNQPNLLKLEAPIKICGDVHGQYPDLLRIFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPRNFFLLRGNHECASINRVYGFYDECKRRYNVKLWKTFTDCFNCLPVAALIDEKIICMHGGLSPELNNLNQIKNLQRPCEVPESGLLCDLLWSDPSSDVQGWGESERGVSYTFGADRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVNETLMCSFQILKPHDKKPKFTFGSTTTVKPGTPTNFKQTLFGAKS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06259 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vivi1g06259 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 298 - -
Vivi1g06259 326 Gene3D - 2 305 IPR029052 -
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vivi1g06259 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vivi1g06259 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vivi1g06259 326 FunFam Serine/threonine-protein phosphatase 1 303 - -
Vivi1g06259 326 CDD MPP_PP1_PPKL 5 294 - -
Vivi1g06259 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vivi1g06259 326 SUPERFAMILY Metallo-dependent phosphatases 18 299 IPR029052 -
Vivi1g06259 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06259 Vivi-Chr1 140470399 140473251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06259 55 239 Calmodulin-binding Proteins AT5G63870 32.273 8.72e-28 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05143 6 155582741 155586606 Vivi1g06259 1 140470399 140473251 ECH
Vivi1g06259 1 140470399 140473251 Vivi1g06259 1 140470399 140473251 ECH