Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06218 ATGAATTCAAGTGAAGAAGGTGATGATGATCATGATCAAGGAAAAAAACGTTCTTATGAATGCACATTTTGCAAAAGAGGTTTCACAAATGCTCAAGCTTTAGGTGGCCACATGAATATTCATAGGAAAGACAGAGCAAAAAGTAACAAAAAACCACAAATTGGTAACAAATTCTTCACCAATGATGAAACTACTTCTATGGTTTTTCCTTTTGTTTCAGCAAATTCTTCTTCTTCTCCTATGAGGCAAATGCAACAATATTTACCAACAATAACACCGAATTATCAACCATCAAATGTGCATGGTTTTGGATGCGATCGATATCCAAAATCTTCTTCGTCTAATTGGCCTAATTTATGTTTTAATCATGAGCTTCAGGGTCCTAATTTGAGTCTTCAAATTGGTCCAACTCATCAGCAAATAATTAGGAGAGGAAATCAAGAAGAAAATGAAGTTGATTTGGAGCTCAGGCTTGGACATGATCCATGA 489 0.3517 MNSSEEGDDDHDQGKKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKSNKKPQIGNKFFTNDETTSMVFPFVSANSSSSPMRQMQQYLPTITPNYQPSNVHGFGCDRYPKSSSSNWPNLCFNHELQGPNLSLQIGPTHQQIIRRGNQEENEVDLELRLGHDP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06218 162 PANTHER OS07G0101800 PROTEIN 15 161 - -
Vivi1g06218 162 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Vivi1g06218 162 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vivi1g06218 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Vivi1g06218 162 SMART c2h2final6 19 41 IPR013087 -
Vivi1g06218 162 Pfam C2H2-type zinc finger 19 43 - -
Vivi1g06218 162 Gene3D Classic Zinc Finger 6 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06218 Vivi-Chr1 138684789 138685325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06218 17 57 C2H2 Transcription Factor Family AT3G09290 70.732 4.15e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g06218 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06218 - - psat:127093235 291.197