Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06163 ATGAGAATCAGATATCTTCATCTCAAGCTCAAAGCATTTAGGTTGAAAAGGTTTCTGCTAAGAGTTCTAGGCAGAAAGAGAATCAGAAGGCTTATGCCAGCAAATAAGCCTTCATGGATGACACCAATAACACATGGTTATCAAGTGGTGGAGCATCATATGATCATAGATGGTTCAGATTACTCAGACTTTGATTCAATAGTGGTACAAAGAGAGCAAATGGATCAAACAGAATTGTGGTATTTTGGAATCTTTGATCCACTAGTAGGGGACAAGGTTACCAAGTATATGCAATCTCATTTCTTTTCAAAGAAGCTTCAAGAGGCTCAGATATGGAGAAAAAGCAAAGAAATGATGAAGAGAGCTTATCTTGGTGTAAGGGCAAAGATGAGAGAAGAGAATAGATATGAAGAAACATGTAGAATGAGTTCAGCATCTGTTATGGTAATCAATGGAGAAAAACTTGTAATAGCTAATATAGGAAATTACAGAGTTGTTGTATGTAGAAATGGCATGGCTCATCAGAAAACTGACACATATCAACAATCAGCCAAAAGACATTGGTCTCACAGAATATTTTCAGGAAATGCTGTAGCTACCAGGTATTCTAGCAGCTCAGAACTTGTCATCAGAAGTGAAAGTATTGACTCTGATACTGAATTTCTGATACTAGCAAGCAATGGCATATGGGAGGTAATGAAGAACCAAGAGGCTGTGAGTCTAATAAGTCACATTGAAGATCCACAAGAAGCAGCTGAATGCTTGGCAAATGAAGCTTTAAATAGAATGAGCAAAAGCAACATCTCATGCTTAATCATTCGCTTTGAATGA 831 0.373 MRIRYLHLKLKAFRLKRFLLRVLGRKRIRRLMPANKPSWMTPITHGYQVVEHHMIIDGSDYSDFDSIVVQREQMDQTELWYFGIFDPLVGDKVTKYMQSHFFSKKLQEAQIWRKSKEMMKRAYLGVRAKMREENRYEETCRMSSASVMVINGEKLVIANIGNYRVVVCRNGMAHQKTDTYQQSAKRHWSHRIFSGNAVATRYSSSSELVIRSESIDSDTEFLILASNGIWEVMKNQEAVSLISHIEDPQEAAECLANEALNRMSKSNISCLIIRFE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06163 276 SUPERFAMILY PP2C-like 68 275 IPR036457 -
Vivi1g06163 276 SMART PP2C_4 42 273 IPR001932 -
Vivi1g06163 276 CDD PP2Cc 65 275 IPR001932 -
Vivi1g06163 276 PANTHER PROTEIN PHOSPHATASE 66 275 IPR015655 GO:0004722|GO:0006470
Vivi1g06163 276 ProSiteProfiles PPM-type phosphatase domain profile. 61 275 IPR001932 -
Vivi1g06163 276 Gene3D - 58 276 IPR036457 -
Vivi1g06163 276 Pfam Protein phosphatase 2C 78 182 IPR001932 -
Vivi1g06163 276 Pfam Protein phosphatase 2C 210 268 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06163 Vivi-Chr1 137492306 137493772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06163 6 275 PP2C-type Phosphatase Gene Family AT3G23360 48.727 1.68e-82 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06163 K19704 - gmx:100785227 370.548