Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06162 ATGAGAATCAGATATCTTCATCTCAAGCTCAAAGCATTTAGGTTGAAAAGGTTTCTGCTAAGAGTTCTAGGCAGAAAGAGAATCAGAAGGCTTATGCCAGCAAATAAGCCTTCATGGATGACACCAATAACACATGGTTATCAAGTGGTGGAGCATCATATGATCATAGATGGTTCAGATTACTCAGACTTTGATTCAATAGTGGTACAAAGAGAGCAAATGGATCAAACAGAATTGTGGTATTTTGGAATCTTTGATCCACTAGTAGGGGACAAGGTTACCAAGTATATGCAATCTCATTTCTTTTCAAAGAAGCTTCAAGAGGCTCAGATATGGAGAAAAAGCAAAGAAATGATGAAGAGAGCTTATCTTGGTGTAAGGGCAAAGATGAGAGAAGAGAATAGATATGAAGAAACATGTAGAATGAGTTCAGCATCTGTTATGGTAATCAATGGAGAAAAACTTGTAATAGCTAATATAGGAAATTACAGAGTTGTTGTATGTAGAAATGGCATGGCTCATCAGAAAACTGACACATATCAACAATCAGCCAAAAGACATTGGTCTCACAGAATATTTTCAGCATATGAATCAGGAAATGCTGTAGCTACCAGGTATTCTAGCAGCTCAGAACTTGTCATCAGAAGTGAAAGTATTGACTCTGATACTGAATTTCTGATACTAGCAAGCAATGGCATATGGGAGGTAATGAAGAACCAAGAGGCTGTGAGTCTAATAAGTCACATTGAAGATCCACAAGAAGCAGCTGAATGCTTGGCAAATGAAGCTTTAAATAGAATGAGCAAAAGCAACATCTCATGCTTAATCATTCGCTTTGAATGA 843 0.3725 MRIRYLHLKLKAFRLKRFLLRVLGRKRIRRLMPANKPSWMTPITHGYQVVEHHMIIDGSDYSDFDSIVVQREQMDQTELWYFGIFDPLVGDKVTKYMQSHFFSKKLQEAQIWRKSKEMMKRAYLGVRAKMREENRYEETCRMSSASVMVINGEKLVIANIGNYRVVVCRNGMAHQKTDTYQQSAKRHWSHRIFSAYESGNAVATRYSSSSELVIRSESIDSDTEFLILASNGIWEVMKNQEAVSLISHIEDPQEAAECLANEALNRMSKSNISCLIIRFE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06162 280 CDD PP2Cc 65 279 IPR001932 -
Vivi1g06162 280 PANTHER PROTEIN PHOSPHATASE 66 279 IPR015655 GO:0004722|GO:0006470
Vivi1g06162 280 ProSiteProfiles PPM-type phosphatase domain profile. 61 279 IPR001932 -
Vivi1g06162 280 Pfam Protein phosphatase 2C 213 272 IPR001932 -
Vivi1g06162 280 Pfam Protein phosphatase 2C 79 182 IPR001932 -
Vivi1g06162 280 SMART PP2C_4 42 277 IPR001932 -
Vivi1g06162 280 SUPERFAMILY PP2C-like 68 279 IPR036457 -
Vivi1g06162 280 Gene3D - 58 280 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06162 Vivi-Chr1 137492306 137493772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06162 6 279 PP2C-type Phosphatase Gene Family AT3G23360 48.727 3.75e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06162 K19704 - gmx:100785227 378.252