Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06151 ATGGATCATGTTATTGGTGGAAAATTCAAACTTGGGAGGAAGATTGGGGGTGGCTCATTTGGAGAGCTATACTTGGGTGTTAATGTGCAAACTGGAGAGGAAGTTGCTGTTAAACTGGAACCTTCGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACGGGTATTCCCCATTTAAAATGGTATGGAGTTGAGGGTGACTACAATGCCATGGCGATTGACCTCCTTGGTCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTGTCTTTGAAAACAGTTCTAATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCTCGGGGTTTCCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGCTTAGGCCGCAAAGCAAATCAGGTATACATCATTGATTATGGCCTTGCAAAAAAGTATCGAGATCTTCACACCCACAAGCATATACCATATAGGGAAAACAAAAACCTCACTGGAACTGCCCGGTATGCCAGTGTTAATACCCATCTGGGAGTTGAACAAAGCAGGAGAGATGATCTAGAATCACTTGGTTATGTGTTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGTTTGAGAGCTGGCAATAAAAAACAAAAATACGACAAAATAAGTGAAAAGAAGATGCTTACTCCTATAGAGGTTTTGTGCAAGTCACATCCATTGGAATTTACATCATACTTCCATTATTGCCGATCACTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTCAAAAGACTCTTTCGTGACCTATTCATCCGAGAAGGCTATCAGTTTGATTATGTGTTTGATTGGACAATATTGAAATATCCACAAATTGGATCCAGTTCCAAAGCCCGACCAAGTGGGAAACCAGTCATAAATCCAGGACAATCTGGAGAGAGAATCGAGCGGCCTTCAGGTGGACCAGAGGTTCGTGATAGATTTTCAGGTGCAGTCGAGGCATTCGCAAGAAGGAATGTGTCTGGGCATGGTCTGCATGGTGATCATTCCAGGCATAGGTCGAAGGATGACGGGCCATCTTCTAAAGACGTGCAAGCCGATTCTGAGAGGCCCCGTAGCTCTTCTCGTCATGGCAGTTCTTCCAAAAGGCCTGTCTTATCAAGCAGCCGTCCAAACTCTTCTGGTGAACCAAGTGAAAGCCGCCGACTGGTCATGAGCAGTAGCCGACTATCTACTACTCAGAGAACTCAACCAGGTTTGGAGTCCAAAACATCATTTAATCGTGCTTCTGGGACAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTATCACTTGGCACAGGAAAAAGGAAATGA 1383 0.4382 MDHVIGGKFKLGRKIGGGSFGELYLGVNVQTGEEVAVKLEPSKTKHPQLHYESKLYMLLQGGTGIPHLKWYGVEGDYNAMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLHTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVFMYFLRGSLPWQGLRAGNKKQKYDKISEKKMLTPIEVLCKSHPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKARPSGKPVINPGQSGERIERPSGGPEVRDRFSGAVEAFARRNVSGHGLHGDHSRHRSKDDGPSSKDVQADSERPRSSSRHGSSSKRPVLSSSRPNSSGEPSESRRLVMSSSRLSTTQRTQPGLESKTSFNRASGTRGGRDDTLRSFELLSLGTGKRK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06151 460 SMART serkin_6 9 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06151 460 CDD STKc_CK1_delta_epsilon 8 282 - -
Vivi1g06151 460 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Vivi1g06151 460 MobiDBLite consensus disorder prediction 348 382 - -
Vivi1g06151 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vivi1g06151 460 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06151 460 MobiDBLite consensus disorder prediction 384 438 - -
Vivi1g06151 460 MobiDBLite consensus disorder prediction 346 460 - -
Vivi1g06151 460 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06151 460 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vivi1g06151 460 MobiDBLite consensus disorder prediction 300 332 - -
Vivi1g06151 460 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vivi1g06151 460 PANTHER CASEIN KINASE-RELATED 9 399 - -
Vivi1g06151 460 FunFam Putative Casein kinase I 1 85 - -
Vivi1g06151 460 FunFam Casein kinase 1-like protein 1 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06151 Vivi-Chr1 137202672 137208487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06151 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 3.56e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi1g06151 Pkinase 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06151 K08960 - cave:132177205 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06151 1 137202672 137208487 Vivi1g06151 1 137202672 137208487 ECH