Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06126 ATGGCTAGTTTGATTGGAAAGGAGAATGGTTTGAACATGAAGGAGACTGAGCTTTGTCTTGGTTTGCCTGGTGGCGGTGGCGGCGGTGGCAGCGAGGTTGAAACTCCTAGAGCTGCTGGAAAGAGAGGCTTCTCTGAGACAGTTGATCTGAAGCTCAATCTTCAAACCAAGGAAGATTTGAGTGAGAATCTGAAGAATGTTTCCAAGGAGAAGAACATGCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCACAGAAGGTTAACAATACTGAGGAGAATGAGAAGACAACAAGTAGCACTACTGCTGGTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTCGACTTGACAATGTACAAAACCTACAAAGACTTATCTGATGCCTTAGCTAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAAAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGGATCATGCAAACGTCTCCGCATTATGAAAGGGTCAGAAGCTATTGGGCTTGCACCAAGAGCAATGGAGAAATGCAAAAACAGAAGCTAA 717 0.4561 MASLIGKENGLNMKETELCLGLPGGGGGGGSEVETPRAAGKRGFSETVDLKLNLQTKEDLSENLKNVSKEKNMLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNTEENEKTTSSTTAGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06126 238 Pfam AUX/IAA family 38 229 IPR033389 -
Vivi1g06126 238 ProSiteProfiles PB1 domain profile. 120 220 IPR000270 GO:0005515
Vivi1g06126 238 MobiDBLite consensus disorder prediction 20 44 - -
Vivi1g06126 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 225 IPR003311 GO:0005634|GO:0006355
Vivi1g06126 238 SUPERFAMILY CAD & PB1 domains 116 219 - -
Vivi1g06126 238 Gene3D - 114 232 - -
Vivi1g06126 238 FunFam Auxin-responsive protein 115 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06126 Vivi-Chr1 136715415 136717887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06126 112 228 B3 DNA Binding Superfamily AT4G23980 29.915 1.58e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g06126 AUX_IAA 5.8e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06126 K14484 - gmx:547949 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06126 1 136715415 136717887 Vivi1g06126 1 136715415 136717887 ECH