Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06116 ATGGAAAACAGTGTTGCATATGTGAATGATCTTAACATGAAGGATACTGAGCTAAGACTAGGACTTCCAGGGACAGAAGAAAATGAGAATGAAAAAACACTTTCTGTTAAAGTTTCCAACAAAAGATCATTGGTTGAAACCTCCAAGGACAGTGCCAGTGGTTCAAAAACATCTGATGCAGCACCTCCTTCTAAGGCAAAAATAGTGGGGTGGCCACCAATAAGATCTTACAGGAAGAACAGTTTGCAAGAGGCTGATGCTTCTGCTATTTACATAAAAGTGAGTTTGGATGGAGCACCTTATCTTAGAAAGATTGATTTGAGAATCTATGGAGGCTATGCACAGCTTCTCAAAGCTTTGGAAAACATGTTCAAGTTAACTATTGGTGAGTACTCAGAAAAAGAAGGTTATAAGGGATCTGAATATGAACCTACATATGAAGATAAAGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACATCTTGTAAAAGACTAAGAATCATGAAAGGAACAGAAGCTAGAGGTGTTTGA 549 0.3825 MENSVAYVNDLNMKDTELRLGLPGTEENENEKTLSVKVSNKRSLVETSKDSASGSKTSDAAPPSKAKIVGWPPIRSYRKNSLQEADASAIYIKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLTIGEYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06116 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 179 IPR003311 GO:0005634|GO:0006355
Vivi1g06116 182 MobiDBLite consensus disorder prediction 19 66 - -
Vivi1g06116 182 MobiDBLite consensus disorder prediction 37 60 - -
Vivi1g06116 182 SUPERFAMILY CAD & PB1 domains 80 175 - -
Vivi1g06116 182 Pfam AUX/IAA family 46 181 IPR033389 -
Vivi1g06116 182 ProSiteProfiles PB1 domain profile. 89 176 IPR000270 GO:0005515
Vivi1g06116 182 MobiDBLite consensus disorder prediction 20 36 - -
Vivi1g06116 182 Gene3D - 83 182 - -
Vivi1g06116 182 FunFam Auxin-responsive protein 84 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06116 Vivi-Chr1 136289799 136291264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06116 23 180 B3 DNA Binding Superfamily AT2G46530 27.119 4.06e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g06116 AUX_IAA 3e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06116 K14484 - gmx:100527777 281.567