Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06109 ATGGTAGGATTGGAACTCATACCAATAGGTACAATTTTAACTGTTGTAACAAACCAAGTATTGCGAACAGCTCATGCTGCAGCTGATGTTCTTATTGGCAAAGAGAGTTTCAAAGCACTTTCGAAATATCTATTCGATATCGAGCCAGTACTAAAGGAGTTACAGCGTCAAGAATTGAATGATTCTCAACCTGCAAGATTTGCTCTAGAGTCCCTCGAAGCAGATGTTAAAAGAGCGAATACTTTGGTTGAGAAATACAAGAATCGCGGACGATTCTACTTACTAGTTAAGTGTCGTTCGATAGTCGAGGAAGTTGAGCAAGTCACAAGGGATATTGGAAGGTCTTTAGCTGCACTGTCGATTGCGAATACTGAAGTGCTGTCGAGGATTTCTGATCAGGTTGATAAGCTGCAAGATGAGATGCAAAGAGTTGAGTTTGAGGCTTCGCAATCTCAGCTTGAGATTGTTGATAAGTTGAACCAAGGCTTAAGAGATCAGAAACAAGATCAGGCTTTCGCGAATGATATACTTGAGGAGATTGCAATGGCGGTTGGAGTTCCCGTGGAACCGTCCGAAATAGGCAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAGGCTGCTAATAGGAAAGAAAAGGCCGAATTCGTTTTCTTGGAGCAGATCATTAAGTTGCTCTCTAGAGCGGATGCGGCTAGAGACTACGAAGAAGTTAAGAATCAATATCTTGAAAGGGTTCAAGTGATAGAAGGATATGATTCGAGGGAGAAATATATCCTACCGCTTAATTCGTTTCTTTGCTGTATAACGGGAGCGGTTATGGTTGATCCTGTTAGCCTTAACACAGGTACAACATGTGAGAGATCGGCGATTGAAGGTTGGTTTTACGATGGAAATAGAACGGATCCGAAAACAAAAGAGGTTCTTGATGATACTAGCTTGAAGTCTAATATTCCGATAAGACAATCAATCGAAGAATGGAGAGAGCTTAATTATTGTCTTCTGATAAGGTCTATCAGGGAAAATTTGTTATCGAATTCTAATCTGCAAGAGTCCTTGAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGATTGGATTTCTATTGGAGAACTTACGGATAATGTTATCTCGATCCTCGGAAACTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACCTTGAAGGATGCTGTAGAGGGGCATGCAAGAAACAAGGAGAAATTGGCTGAATCACAAGGATGGGATCATATCATTGCGTGCTTAGAATGCGACTCTAACAATTCAAATGCAGCAATTGATTTGTTATATGAGTTGCTTCAAGACCGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACAACACTGCAGTTCCTTTCCTTGTAACTCTTGTAAAGGACCCTGAAAATGATTCGGCCGAGGTTGCGCAGAAGATTTTAAAGGAGCTTTTTGAAATAAATGAAGGCAGCATTATCACTGCTGCTAATTGTGGCTGGCATAAGCCGCTAGCTGATCGTATGATTCGAGGACCTGATTCAAGAATGTCGATGGCGAAAGCCATAGTTAATTTGGAGTTGGATGATTTAAACTTGATACAACTTGGCAAGGAAGGAGTTATAACTCCTTTGATCGAAATGCTGTCTGGAAGTATTGAATCGAAAGACCTGTCATTATCAGCTCTTGTTAAGTTAGCTGGATCTCATGCCAACAAGGGAATTATCGCTTCCTCTGGAGGTGTTCCTCTTATTCTAGATTTATTGTTCTCGCCTCGGACAAGGGCTTTCATTACCATTAAATGCTCCGAAATTCTTGAGAAACTTTCTTCTTCTGACGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAGCTTGAGTTAGATTCCATCATCACCAATTTGCTACATTTGCAACAAAGTTCGAATTCAGGCCACAACCTCCGAAAGCCTACCTTACGCGCTCTCCTCGGCATTTGCAAATTCGAGACTGGTTTTGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATCCTTCCACTTCTTGATGATTCCGACTCAGAAATCCGAGAGACTGCGATAAACCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGGAGGCTAGAAGCTTTGATTGGATTTCTCGAGAACGATGACAACGATAACGTACAAATGGCTGCAGCCGGTTTACTAGCCAACTTACCGAAATCAGAACGAGAACTAACCTCAAAGTTGATTGAAATGGGAGGACTTGACGCAATCATAAGCATTTTAAAGACCGGAAAAATGGAAGCAAAAGAACACGCTCTCAGCGCACTCTTCAGGTTCACGGATCCTACAAACATCGAGTCACAGCGCGATTTAGTTAAACGCGGAATATACCCCTTGCTTGTAAACTTTCTCAATACTGGTTCAATCACTGCAAAGGCAATAGCAGCAGCTTTCATCGGCGATCTTTCAATGAGCACACCAAAGCTAACAGATGTTTCAAAACCAACTGGTTGCTGGTTTTGCAGACCATCGCGCGTTCCCTTATGCGCAGCGCACGACAGCATATGCAGCGCGACAACCACCTTCTGTCTATTGGAAGCAGATGCTTTACCTGGTTTGATAAAGCTGTTACAAGGAGAGGTTCATGCAACTGCTTTTGAAGCAATACAAACACTTTCTACATTGGTTTTAGAGGAGTTTCCACATCGAGGCGCTCGTTTGTTGCATGAGTCAAATGCAATGAGGCCTTTATTGGAGATTTTGAATTGGGGTAGTGAGTCACTAAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTACGGAATGACGGCGAGATCGCGGCTTGTTTGTTTGACTGGAAATAATATATATGGGGATGGTCACCTTAGAAGGAAAGCTGCTAAGGTATTGTCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCTATTTCTGGAGTTTTGGAGTGA 3042 0.4172 MVGLELIPIGTILTVVTNQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQRQELNDSQPARFALESLEADVKRANTLVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVDKLQDEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIAMAVGVPVEPSEIGKELASIRKEKEEAANRKEKAEFVFLEQIIKLLSRADAARDYEEVKNQYLERVQVIEGYDSREKYILPLNSFLCCITGAVMVDPVSLNTGTTCERSAIEGWFYDGNRTDPKTKEVLDDTSLKSNIPIRQSIEEWRELNYCLLIRSIRENLLSNSNLQESLSQMQALIAENSINKDWISIGELTDNVISILGNSNDREVKMKILITLKDAVEGHARNKEKLAESQGWDHIIACLECDSNNSNAAIDLLYELLQDRSGWNQCFCKKLSENNTAVPFLVTLVKDPENDSAEVAQKILKELFEINEGSIITAANCGWHKPLADRMIRGPDSRMSMAKAIVNLELDDLNLIQLGKEGVITPLIEMLSGSIESKDLSLSALVKLAGSHANKGIIASSGGVPLILDLLFSPRTRAFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITNLLHLQQSSNSGHNLRKPTLRALLGICKFETGFVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTSKLIEMGGLDAIISILKTGKMEAKEHALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSITAKAIAAAFIGDLSMSTPKLTDVSKPTGCWFCRPSRVPLCAAHDSICSATTTFCLLEADALPGLIKLLQGEVHATAFEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGMTARSRLVCLTGNNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06109 1013 Coils Coil 69 89 - -
Vivi1g06109 1013 Gene3D - 341 503 IPR011989 -
Vivi1g06109 1013 SUPERFAMILY ARM repeat 459 719 IPR016024 -
Vivi1g06109 1013 Gene3D - 512 849 IPR011989 -
Vivi1g06109 1013 Gene3D - 857 1008 IPR011989 -
Vivi1g06109 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vivi1g06109 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vivi1g06109 1013 SUPERFAMILY RING/U-box 250 330 - -
Vivi1g06109 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 333 IPR013083 -
Vivi1g06109 1013 Coils Coil 127 154 - -
Vivi1g06109 1013 CDD MLKL_NTD 34 145 - -
Vivi1g06109 1013 Gene3D - 8 124 IPR036537 GO:0007166
Vivi1g06109 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vivi1g06109 1013 CDD RING-Ubox_PUB 265 314 IPR045210 -
Vivi1g06109 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Vivi1g06109 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Vivi1g06109 1013 SUPERFAMILY ARM repeat 336 497 IPR016024 -
Vivi1g06109 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Vivi1g06109 1013 SUPERFAMILY ARM repeat 634 1001 IPR016024 -
Vivi1g06109 1013 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06109 Vivi-Chr1 136195993 136200241 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06109 264 968 U-box Gene Family AT1G20780 27.056 1.37e-39 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06109 - - gmx:100783638 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06109 1 136195993 136200241 Vivi1g06109 1 136195993 136200241 ECH