Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06088 ATGATTTGCATGAAAATGGAGGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTGGCGGGTAATCAAGTTCCAGTGAGCTTCCATGGAGCTCCAAGGATTGAAAACAATTTGGATTTTTCCATGGTGACGGTGCCGGTGTCGATGCCGGTGACCGCGGTGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGGCCAGATGGGAAGCCTGCTCCTGGGGCTGTGACCGCGCTTTCGCCGATGCCGATTTCTTCGTCGATTCCGTTGACGGGAGAGTTCTCTGCTTGGAAAAGGGGTGGAGGGAAGCCTGTCGAATCTATCAAGAAATCAGCTTTTAAGTTTGATTTTGAAAGTCCACCTGGACAAGGTGTAAGTGTAGGTGCAAGTGCAGGTGCAGGTGCAGGTGAGGGAATTGCTAAGGCAGTAGGTGCCAATTTCATGGCTTATATACTTACAGTGAATTCTGGCGAGGATGTCACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTCCGTCAATCGACTTCTTCAGGGGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGAATGAGCGTCTCTTTGGCAGGTCCGGATGGTCGAGTATTAGGCGGTGGGCTCGCTGGTTTGCTTATAGCTTCTGGTCCTGTCCAGGTTGTTGTGGGAAGTTTTCTTCCTAACCACCATCTAGACGATAAAAGCAAGAAGCAGCGGGTGGAGCATAATATATCAACCATTAAACATAATCATCCTCCTCCACATGTTAATCATCATCATCATCATCACACGTCTAACGAAGTAAGTTTTGGTGGTGTGAAACCTATTATGACACCTGCTGCATTTCAAGAAGAGAAAATTGTTTCTTTCAACAACAACAACAACAATGTTCAAGACTCTAGGAACAATTCATCTGCTGATGACAAAGATCCTTTACCTGAAAAGGATTCTAATCATAGCCAATCAAATGCTTGA 1077 0.4531 MICMKMEERENFGAVNAVAGNQVPVSFHGAPRIENNLDFSMVTVPVSMPVTAVKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGGGKPVESIKKSAFKFDFESPPGQGVSVGASAGAGAGEGIAKAVGANFMAYILTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPNHHLDDKSKKQRVEHNISTIKHNHPPPHVNHHHHHHTSNEVSFGGVKPIMTPAAFQEEKIVSFNNNNNNVQDSRNNSSADDKDPLPEKDSNHSQSNA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06088 358 Gene3D - 147 282 - -
Vivi1g06088 358 MobiDBLite consensus disorder prediction 280 305 - -
Vivi1g06088 358 CDD DUF296 148 259 IPR005175 -
Vivi1g06088 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 262 - -
Vivi1g06088 358 ProSiteProfiles PPC domain profile profile. 142 284 IPR005175 -
Vivi1g06088 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 340 IPR039605 GO:0003680
Vivi1g06088 358 MobiDBLite consensus disorder prediction 325 358 - -
Vivi1g06088 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 259 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06088 Vivi-Chr1 135577438 135581042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06088 53 272 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 61.062 2.55e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06088 - - gmx:100789179 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05652 2 184719849 184723314 Vivi1g06088 1 135577438 135581042 ECH
Vivi1g06088 1 135577438 135581042 Vivi1g06088 1 135577438 135581042 ECH
Vivi2g05652 2 184719849 184723314 Vivi1g06088 1 135577438 135581042 PCT