Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06072 ATGGTCGTTAGCGGAGCCAAATCCCTGAAGCGCGTGAAGAAGAGAGTCACCGCCGATCACCACGATTTTTTTACGTTCCCTTCACCATCCCTCGCCGCCTCGGAAAGCTTCTCAATCGGTCCATTCCGCTCCAACATCCGTTCGTTTCTCACGAAGTACGCGCTCCTCCCGCCGCCTTCGGCGCTGTTCCCACACCTTCTGACGTGGCAGATCCTCTTCCGTGTAGGTGAGATCACCGAAGGCTCTGAATCTGGACCGGCGGTAGTGTGCCTCGACGTTGTGGAAGAGGACGTGGCCAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCAACCCAGTGTGCGGGAAACGCTACCATTTCATAATCAAAGCTAATGGGGGATCAATTGGTGGATACCACAAACCGTGTATGTGTTGCGGAGACAGTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGCAATCATGTAACAACCAGTGATGATGTTGAAGAATGGGTATACCACCAACTAGAGAATACAAGTCATCTTTTACATGGTGTAGTCCATGCAAATGGTTATGGGCACCTTCTCCGGGTTAATGGCAGAGAAGGGGGGTCGAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTTAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATACGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGAGACATCCGTGGTATGGTGAGTGGGGATATAATTTTGGCTCCGGTAGCTATTGTCTCACGAAGGAAGCACATAAGTCTGCTGTTGACAACCTATCCAATCTACCCCTGTCCATCTTTCTCTCCCATGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGATGCACAGTGCTCGCAAGAATGCCTCTAAGTCTGATGACGTAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGGGAAGAGTGACATTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGCGCAGTGTCTGGGTCTAATTGGGTGAGCCGCCGTGCTCTTAGGGGTGCTGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGGAAAGTGGTGTATGGTGGCACTGTTAACAGCAGACGCAATCCTGAAACTGGAGTTGATGAATTCAGAATTGATGCGACAAGCTTCGATGGGTTTATGGCCAACAGTAATTCTTCAGGCTCAAAGTGTCCATCTGAAGAGAATCTCCTGCAATGCTTGAGATATTTATACGAGTCTTTGCTTCATCCTCGGATGATGCTAAACTATGTCGAAGAAGATACAAAAACGCTTGCAATGAGCTCAGCTCAGAAACTTCTTGACTGCAAGCAATTAATAAAAGATTATTGTACTGAGATGTTGCCAGTGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAGCTAGTTGATCAATCTGAAGATTCCGCAGCTAGAACTCCTCCTGAAATAATTGTGCTGCCCACAAATGCGACAGTATCTGACCTTAAGATTGAAGCGGCAAATGTATTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGATGAACTACTTGGCTACAGAGGTGTGGACGATTCCACCCAAGTCAAGCACTTGTTAAAACCAAATGAAGTGGTTTGTATCCGAGGAAGATGCTCCGGGAAGAATGGGGTGAGCAAGTTTCGAATGGAACGGGGACTTGAGAGATGGACTGTGGAGTGCAGCTGTGGGGCTAAGGACGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGAGTGTGGCGGCACACCAGGTGTTCTGGCATTCCTGATATTGCACCTGTTCCAGCACGTTTTGTTTGCCAGAGATGCCAAAATTGCGACTCAAAGCCTATATCTGGTGGGCACTTAAAAGATGAGACTGTGACTAGTGTTAGTACCCCTAGAAGTAGTTTCTTTGGCAATGGTGTGCCAGTGCTTTCTGATCGTTAG 2127 0.4687 MVVSGAKSLKRVKKRVTADHHDFFTFPSPSLAASESFSIGPFRSNIRSFLTKYALLPPPSALFPHLLTWQILFRVGEITEGSESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGNPVCGKRYHFIIKANGGSIGGYHKPCMCCGDSLHLSESKCKSCNHVTTSDDVEEWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKRHPWYGEWGYNFGSGSYCLTKEAHKSAVDNLSNLPLSIFLSHEQKPHSRVQDMILYYQSLSEHELVNMRDLFCFLMGLMHSARKNASKSDDVTCKKRRFDASGLSSSWGKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGTVNSRRNPETGVDEFRIDATSFDGFMANSNSSGSKCPSEENLLQCLRYLYESLLHPRMMLNYVEEDTKTLAMSSAQKLLDCKQLIKDYCTEMLPVSDLYKIRISCQVELVDQSEDSAARTPPEIIVLPTNATVSDLKIEAANVFQDVYLMFRRFQVDELLGYRGVDDSTQVKHLLKPNEVVCIRGRCSGKNGVSKFRMERGLERWTVECSCGAKDDDGERMMACDTCGVWRHTRCSGIPDIAPVPARFVCQRCQNCDSKPISGGHLKDETVTSVSTPRSSFFGNGVPVLSDR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06072 708 CDD PHD_MMD1_like 624 669 - -
Vivi1g06072 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Vivi1g06072 708 SUPERFAMILY FYVE/PHD zinc finger 613 671 IPR011011 -
Vivi1g06072 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 679 - -
Vivi1g06072 708 Pfam PHD-finger 625 672 IPR019787 -
Vivi1g06072 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Vivi1g06072 708 SMART PHD_3 624 670 IPR001965 -
Vivi1g06072 708 ProSiteProfiles Zinc finger PHD-type profile. 622 672 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06072 Vivi-Chr1 135212413 135218500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06072 86 669 PHD Transcription Factor Family AT5G22260 29.825 8.50e-83 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1g06072 PHD 3.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06072 K26271 - gmx:100818189 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06072 1 135212413 135218500 Vivi1g06072 1 135212413 135218500 ECH