Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06069 ATGGAGAAAAATACAGTAGTGAAATATAAAGAGTGCCTCAAGAACCATGCTGCTGCAATTGGTGGCAATGCAACTGATGGATGTGGCGAGTTCATGGCTAGTGGAGACAGTGACTCACTTGAAGCTTTTAACTGTTGTGCTTGTAATTGCCACAGAAACTTCCACAGAAAAGAAATAGAGTATGATTCTCAATATTATCCTCTTTCATTGATTCCTGATCATAACATTAATACCCCCTTCTTGGCTCATTTATCTCCAATCAAAAGTGAATCAAATAGTCCTTCTGATCAGCCTTACTATGAGAAAGATTGTATCAAAGAGGTGGAAAATCGAACGGAAAAGATGATTAAGAAGAGGTCTAGAACCAAGTTTAGTAAAGAACAGAAGGAGAAGATGTTGTGTTTTGCAGAAAAAGCTGAATGGAGGATACAGAAGCTAGAGGAATCTGTGGTGCAGATGTTTTGTCAAGAGATTGGAATCAAGAGAAAAATACTCAAAGTGTGGATGCACAATAATAAGAACACTTTTTCCAAAAGAAATGTTTGTAGTATTAGTGACAAATTTTAG 567 0.3668 MEKNTVVKYKECLKNHAAAIGGNATDGCGEFMASGDSDSLEAFNCCACNCHRNFHRKEIEYDSQYYPLSLIPDHNINTPFLAHLSPIKSESNSPSDQPYYEKDCIKEVENRTEKMIKKRSRTKFSKEQKEKMLCFAEKAEWRIQKLEESVVQMFCQEIGIKRKILKVWMHNNKNTFSKRNVCSISDKF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06069 188 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Vivi1g06069 188 Gene3D - 105 178 - -
Vivi1g06069 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 175 - -
Vivi1g06069 188 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Vivi1g06069 188 FunFam Zinc-finger homeodomain protein 2 105 178 - -
Vivi1g06069 188 SUPERFAMILY Homeodomain-like 114 178 IPR009057 -
Vivi1g06069 188 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Vivi1g06069 188 NCBIfam homeobox domain, ZF-HD class 117 174 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06069 Vivi-Chr1 135161371 135162018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06069 3 186 ZF-HD Transcription Factor Family AT1G14440 47.549 7.31e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi1g06069 ZF-HD_dimer 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06069 - - gmx:100793926 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06069 1 135161371 135162018 Vivi1g06069 1 135161371 135162018 ECH