Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06067 ATGATCTGTTATCTGTTCAGGCGTTTGAGGGCATTCAAGCGGTGGATGAAATCCAACGGATTCGAATGGAGCAATGCATTGGAGTTTGTGGACACCCCTGAACAAGGAATATCCGTTAAAGCATTGTGCCAAATGAATGAAGGTGATGTGGTTGCAAAAATGCCAAAGCAAGCTTGTCTTACAATCAAGACTAGTGGTGCATGTGACATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTCTTGCTGTTGCTATCATGTATGAGAGAAGTTTGGGTGGGGATTCTCCTTGGGCTGGTTACCTTCAGCTTTTGCCTCAACAAGAGTCTTTGCCTTTGGTTTGGACTCTTGATGAAGTAAGTGACCTTTTGTGTGGTACTGAGCTTCAACAGACAGTGCAAGAAGACAAAGCTCTTGTGTATGAGGACTGGAAAGAGAATATTCTACCCCTGTTGGATTCAGAACCTTCAAAGCTTAACCCGACGTTCTTCGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTAGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTCCCCCTAGCGGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTTACCGCTTTGTCTTCTAATGATGAATCTGAAGACAATGCTGACGAAGGAATTATTGATGAAGAAGCATTAGCTCAAAATTCATCTATGGATACGACTGAGAAGGGTGTGGTTAGTGACACAGAGTATTCTTCGGTTACTGAGGACGATACATCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCAGTGGAGCCGAAGTATATAATACTTACGGCTTATTGGGTAATGCCGCATTGCTACATAGATATGGATTTACCGAGCAAGATAATACCTATGATATTGTAAATATTGATATGGAGCTGGTACTTCAATGGTGTTCTTCTCTATTCTCTGACCGCCACAGCAGATCAAGAATCTCCCTTTGGAGAAAGTTAGGCTATTCTGGTGACAGCGAAAACTCAGAATATTTCGAGATATCATTTGACGGAGAACCACAGATTGAACTCATCATTTTATTACACATCATATTTTTACCGGATGATGTCTACCATAAATTAGACTTATCAGTAGCAGTTGCTGGAAATTATGGGACTAGTATGAGCAAGAAGCCATTGATGACGAAAGAAATTTGCGCAGCTTTGTTGTCACTGGCTGATATAAGGGAGAGTCTCTATGGTTTGAAATCAATGGAAGATGATGTTGAGGCGCTGGAAAGGTGTAGTTTTGTTGAAGACAGAAAGGTGTATCATTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTGCTAAACCTAGTTCTGCCAGGAAGAAGGTGAAAAGGACAGCATAG 1437 0.4085 MICYLFRRLRAFKRWMKSNGFEWSNALEFVDTPEQGISVKALCQMNEGDVVAKMPKQACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQESLPLVWTLDEVSDLLCGTELQQTVQEDKALVYEDWKENILPLLDSEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESEDNADEGIIDEEALAQNSSMDTTEKGVVSDTEYSSVTEDDTSMLEMVMIKDVSSGAEVYNTYGLLGNAALLHRYGFTEQDNTYDIVNIDMELVLQWCSSLFSDRHSRSRISLWRKLGYSGDSENSEYFEISFDGEPQIELIILLHIIFLPDDVYHKLDLSVAVAGNYGTSMSKKPLMTKEICAALLSLADIRESLYGLKSMEDDVEALERCSFVEDRKVYHSLVLRISERKIIQKLRNYASKSCKIAKPSSARKKVKRTA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06067 478 ProSiteProfiles SET domain profile. 25 281 IPR001214 GO:0005515
Vivi1g06067 478 Pfam SET domain 36 281 IPR001214 GO:0005515
Vivi1g06067 478 Gene3D set domain protein methyltransferase, domain 1 5 294 - -
Vivi1g06067 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 422 - -
Vivi1g06067 478 CDD SET_LSMT 26 295 - -
Vivi1g06067 478 PIRSF RMS1_SET 4 462 IPR011383 GO:0016279|GO:0018026
Vivi1g06067 478 SUPERFAMILY SET domain 7 299 IPR046341 -
Vivi1g06067 478 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 291 463 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06067 Vivi-Chr1 135149734 135152450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06067 7 474 NAC Transcription Factor Family AT3G56570 53.244 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g06067 SET 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06067 - K05302 gmx:100794971 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06067 1 135149734 135152450 Vivi1g06067 1 135149734 135152450 ECH