LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g06067	ATGATCTGTTATCTGTTCAGGCGTTTGAGGGCATTCAAGCGGTGGATGAAATCCAACGGATTCGAATGGAGCAATGCATTGGAGTTTGTGGACACCCCTGAACAAGGAATATCCGTTAAAGCATTGTGCCAAATGAATGAAGGTGATGTGGTTGCAAAAATGCCAAAGCAAGCTTGTCTTACAATCAAGACTAGTGGTGCATGTGACATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTCTTGCTGTTGCTATCATGTATGAGAGAAGTTTGGGTGGGGATTCTCCTTGGGCTGGTTACCTTCAGCTTTTGCCTCAACAAGAGTCTTTGCCTTTGGTTTGGACTCTTGATGAAGTAAGTGACCTTTTGTGTGGTACTGAGCTTCAACAGACAGTGCAAGAAGACAAAGCTCTTGTGTATGAGGACTGGAAAGAGAATATTCTACCCCTGTTGGATTCAGAACCTTCAAAGCTTAACCCGACGTTCTTCGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTAGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTCCCCCTAGCGGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTTACCGCTTTGTCTTCTAATGATGAATCTGAAGACAATGCTGACGAAGGAATTATTGATGAAGAAGCATTAGCTCAAAATTCATCTATGGATACGACTGAGAAGGGTGTGGTTAGTGACACAGAGTATTCTTCGGTTACTGAGGACGATACATCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCAGTGGAGCCGAAGTATATAATACTTACGGCTTATTGGGTAATGCCGCATTGCTACATAGATATGGATTTACCGAGCAAGATAATACCTATGATATTGTAAATATTGATATGGAGCTGGTACTTCAATGGTGTTCTTCTCTATTCTCTGACCGCCACAGCAGATCAAGAATCTCCCTTTGGAGAAAGTTAGGCTATTCTGGTGACAGCGAAAACTCAGAATATTTCGAGATATCATTTGACGGAGAACCACAGATTGAACTCATCATTTTATTACACATCATATTTTTACCGGATGATGTCTACCATAAATTAGACTTATCAGTAGCAGTTGCTGGAAATTATGGGACTAGTATGAGCAAGAAGCCATTGATGACGAAAGAAATTTGCGCAGCTTTGTTGTCACTGGCTGATATAAGGGAGAGTCTCTATGGTTTGAAATCAATGGAAGATGATGTTGAGGCGCTGGAAAGGTGTAGTTTTGTTGAAGACAGAAAGGTGTATCATTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTGCTAAACCTAGTTCTGCCAGGAAGAAGGTGAAAAGGACAGCATAG	1437	0.4085	MICYLFRRLRAFKRWMKSNGFEWSNALEFVDTPEQGISVKALCQMNEGDVVAKMPKQACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQESLPLVWTLDEVSDLLCGTELQQTVQEDKALVYEDWKENILPLLDSEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESEDNADEGIIDEEALAQNSSMDTTEKGVVSDTEYSSVTEDDTSMLEMVMIKDVSSGAEVYNTYGLLGNAALLHRYGFTEQDNTYDIVNIDMELVLQWCSSLFSDRHSRSRISLWRKLGYSGDSENSEYFEISFDGEPQIELIILLHIIFLPDDVYHKLDLSVAVAGNYGTSMSKKPLMTKEICAALLSLADIRESLYGLKSMEDDVEALERCSFVEDRKVYHSLVLRISERKIIQKLRNYASKSCKIAKPSSARKKVKRTA	478

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi1g06067	478	ProSiteProfiles	SET domain profile.	25	281	IPR001214	GO:0005515
Vivi1g06067	478	Pfam	SET domain	36	281	IPR001214	GO:0005515
Vivi1g06067	478	Gene3D	set domain protein methyltransferase, domain 1	5	294	-	-
Vivi1g06067	478	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	8	422	-	-
Vivi1g06067	478	CDD	SET_LSMT	26	295	-	-
Vivi1g06067	478	PIRSF	RMS1_SET	4	462	IPR011383	GO:0016279\|GO:0018026
Vivi1g06067	478	SUPERFAMILY	SET domain	7	299	IPR046341	-
Vivi1g06067	478	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	291	463	IPR036464	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g06067	Vivi-Chr1	135149734	135152450	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g06067	7	474	NAC Transcription Factor Family	AT3G56570	53.244	0.0	518

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Vivi1g06067		SET	1e-08	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g06067	-		K05302	gmx:100794971	693.345

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi1g06067	1	135149734	135152450	Vivi1g06067	1	135149734	135152450	ECH

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