Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06066 ATGGCCACCAGGCGTTTGAGGGCATTCAAGCGGTGGATGAAATCCAACGGATTCGAATGGAGCAATGCATTGGAGTTTGTGGACACCCCTGAACAAGGAATATCCGTTAAAGCATTGTGCCAAATGAATGAAGGTGATGTGGTTGCAAAAATGCCAAAGCAAGCTTGTCTTACAATCAAGACTAGTGGTGCATGTGACATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTCTTGCTGTTGCTATCATGTATGAGAGAAGTTTGGGTGGGGATTCTCCTTGGGCTGGTTACCTTCAGCTTTTGCCTCAACAAGAGTCTTTGCCTTTGGTTTGGACTCTTGATGAAGTAAGTGACCTTTTGTGTGGTACTGAGCTTCAACAGACAGTGCAAGAAGACAAAGCTCTTGTGTATGAGGACTGGAAAGAGAATATTCTACCCCTGTTGGATTCAGAACCTTCAAAGCTTAACCCGACGTTCTTCGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTAGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTCCCCCTAGCGGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTTACCGCTTTGTCTTCTAATGATGAATCTGAAGACAATGCTGACGAAGGAATTATTGATGAAGAAGCATTAGCTCAAAATTCATCTATGGATACGACTGAGAAGGGTGTGGTTAGTGACACAGAGTATTCTTCGGTTACTGAGGACGATACATCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCAGTGGAGCCGAAGTATATAATACTTACGGCTTATTGGGTAATGCCGCATTGCTACATAGATATGGATTTACCGAGCAAGATAATACCTATGATATTGTAAATATTGATATGGAGCTGGTACTTCAATGGTGTTCTTCTCTATTCTCTGACCGCCACAGCAGATCAAGAATCTCCCTTTGGAGAAAGTTAGGCTATTCTGGTGACAGCGAAAACTCAGAATATTTCGAGATATCATTTGACGGAGAACCACAGATTGAACTCATCATTTTATTACACATCATATTTTTACCGGATGATGTCTACCATAAATTAGACTTATCAGTAGCAGTTGCTGGAAATTATGGGACTAGTATGAGCAAGAAGCCATTGATGACGAAAGAAATTTGCGCAGCTTTGTTGTCACTGGCTGATATAAGGGAGAGTCTCTATGGTTTGAAATCAATGGAAGATGATGTTGAGGCGCTGGAAAGGTGTAGTTTTGTTGAAGACAGAAAGGTGTATCATTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTGCTAAACCTAGTTCTGCCAGGAAGAAGGTGAAAAGGACAGCATAG 1428 0.4111 MATRRLRAFKRWMKSNGFEWSNALEFVDTPEQGISVKALCQMNEGDVVAKMPKQACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQESLPLVWTLDEVSDLLCGTELQQTVQEDKALVYEDWKENILPLLDSEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESEDNADEGIIDEEALAQNSSMDTTEKGVVSDTEYSSVTEDDTSMLEMVMIKDVSSGAEVYNTYGLLGNAALLHRYGFTEQDNTYDIVNIDMELVLQWCSSLFSDRHSRSRISLWRKLGYSGDSENSEYFEISFDGEPQIELIILLHIIFLPDDVYHKLDLSVAVAGNYGTSMSKKPLMTKEICAALLSLADIRESLYGLKSMEDDVEALERCSFVEDRKVYHSLVLRISERKIIQKLRNYASKSCKIAKPSSARKKVKRTA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06066 475 Pfam SET domain 33 278 IPR001214 GO:0005515
Vivi1g06066 475 ProSiteProfiles SET domain profile. 22 278 IPR001214 GO:0005515
Vivi1g06066 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 419 - -
Vivi1g06066 475 Gene3D set domain protein methyltransferase, domain 1 2 291 - -
Vivi1g06066 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 460 IPR036464 -
Vivi1g06066 475 PIRSF RMS1_SET 1 459 IPR011383 GO:0016279|GO:0018026
Vivi1g06066 475 SUPERFAMILY SET domain 4 296 IPR046341 -
Vivi1g06066 475 CDD SET_LSMT 23 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06066 Vivi-Chr1 135149614 135152450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06066 1 471 NAC Transcription Factor Family AT3G56570 53.409 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g06066 SET 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06066 - K05302 gmx:100794971 697.197