Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06060 ATGGCACATAGAGTTCGCTTCGAGAATTCTTGCGAAGTTGGTGCCTTCTCAAAACTTACCAATGCATATTGTTTGGTTGCCATTGGAGGCTCGGAAAGTTTCTACAGTACATTTGAGGCTGAGTTATCGGATGTTATCCCTGTGATCAAAACTTCCATTGGTGGAACTCGTATTGTTGGCCGTCTTTGTATTGGAAACAAGAATGGACTTCTATTGCCTCATACCACCACAGACCAAGAACTTCAACATTTGAAAAACAGTCTACCTGATCATGTTCGTGTTCAGCGTATAGAAGAAAAATTATCTGCCCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACGCACACTGATCTCGACAGGGAAACTGAGGAGGTCCTTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGCAATGTTCTTGTGGGAAGTTACTGTGCTTTCTCCAACAAAGGTGGTTTGGTCCACCCGCATACTTCGATTGAAGACTTGGATGAACTTTCTACGCTTCTTCAAGTTCCGTTGGTTGCTGGAACTGTTAATCGCGGTAGTGAAGTAATAGGTGCTGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTTAGACACCACGGCGACAGAACTCTCAGTGATTGAGAGTGTTTTCAAACTGAGGGGGGGAGGCAATCCTCCTAGTTGCGATGAGGATGATAATTGA 717 0.4435 MAHRVRFENSCEVGAFSKLTNAYCLVAIGGSESFYSTFEAELSDVIPVIKTSIGGTRIVGRLCIGNKNGLLLPHTTTDQELQHLKNSLPDHVRVQRIEEKLSALGNCIACNDHVALTHTDLDRETEEVLADVLGVEVFRQTVAGNVLVGSYCAFSNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMTVNDWTAFCGLDTTATELSVIESVFKLRGGGNPPSCDEDDN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06060 238 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 SUPERFAMILY Pentein 1 224 - -
Vivi1g06060 238 Hamap Translation initiation factor 6 [eif6]. 1 238 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 CDD IF6 4 223 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 Gene3D - 1 225 - -
Vivi1g06060 238 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vivi1g06060 238 FunFam Eukaryotic translation initiation factor 6 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06060 Vivi-Chr1 135040665 135043456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06060 1 235 Eukaryotic Initiation Factors Gene Family AT3G55620 81.702 5.22e-148 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06060 K03264 - aew:130778150 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05728 2 186114555 186118647 Vivi1g06060 1 135040665 135043456 PCT