Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06053 ATGGTTCCACTAGTGCATTTGCTTGGTGAAGGAATTGTTGGTGAAGCTGCTTTCAAAGGAAAGTATAGTTGGTTACATTCAGTTAGTTGTGAGGATGATTTTGGTATGTTTCAACAATTCAACTCTGGAATGATTAAGACAATTGTGGCCATTCCGGTCAAGGCATTTGGAGTGGTACAGTTTGGATCCAGAAAGAAGGTTTTGGAGACAAGGGATTTTTTGGATCAAGCACAAAGTTTGCTCAAGGAGATAGATGAAATCGATGTGATAAACGACTCAGAAAATGCAGTTTTGTCGATGGATTTTACGAACGATGATCTCGATGGATTGCTAGCTTCGTTTTCCTCTGAAAATTCATGTGACTGGAATCTCAATTCTGCTAATGATGAAAACTATAAAGATCTGAGAGAAGTTTTTTCTCCTTGTGAAGAAAGGATCACATCGCTAGAATTCGAGGAAAATTCTTGTTTTGATTCATTGTTGCACCAGTTTTTATCTGAAACAATGGCACAAGAAGTTCATGATTCATCGTTGGCCTCATTGCAGAATATAGCCGAAGTTTCGTTTCAAGAAAAGATACAAAACTCAATGGATAATGTTGTGACAGAAGTTGATTTACCATCGAGTTCAAGTATACTAAATGGCATCTCGAATAGTTTAGAGCCGGTCGATATGTTGGAAGAGTTTTTGAAGTTCGGCTCCGTGGATGATCTTTGCAAATGGTTCGATCCTTCTCCAGACGAGACTACTATCTGCAAAACAATGGCTCAATTGGAAAAAACACTTTCCGAACCAATAGAGTTTAATCCTATTTGCTCAGATCTTGGCCTGGTCGAGAAAGAAACATCGGTAGTAATACATAGTTCCGAGAATATTTTCTTGGGCAACACGGAATTCGATTTGGGAAGTGATCGAGGTAGTGAATTGTGGGGGAGTTTACTTACACCAATGGTGAATGCTGCTGGCACTGATAATACCTCCTTTTCTGAATGCGTATCAGAGATAAATACCAGTACACCGACCGATAGTTCTCGGAAGAGGCTATTCGCAGAGTTAGGAATCGAAGAGCTTTTGAGATGTGAAGCGAATTACAACAATCCTTTTAGCAGTTCGAATTTTGAAAATGCGATATCGTCTAATAAAAAACAGATGGTGGAGTTTTCGCCTACGAATAGAACTCAAGTTCATTTCGCAAACCTTACCGGATCAAACTTGATGCACCCTGTTTCTGACTTGGAAGATTCCAATAGTGTTTTAACTAAGAAAGATACATTCTCAAAATTACAAGTTGGCATATCGGTTAATGATCGAAACAGCATCAACGTTAAGAGGGCAGTTCCTGCAAATGCGAAAAGGCCTGAACAGCCTGCAAAGCACGCCAAGAAGAAGGCTAAACCGGGGGAAAGCACTCGTCGGCCAAAAGATCGGCAGCTGATTCAAGACTGTATTAAAGAGTTGAGGGGAATCATCCCTCATGGAGGAAAGTGTAGCATCGATTCGTTGTTAGACCGCACGATCAGATACATGCTTTTCTTAGGCAGTGTCGTCAAATATGCAGACAAATTACAAGAGCCTAATGAGCCAAAGCTTCTTGATCAAGCAAATGGAGTGATTCCAAAAGACAAAAACCATGGTGCTACATGGGCATTTGAAGTATCAAACCCAACAATGTTATGTCCAATTATAGTTGAGGACATGAATCCACCAGGCCAAATGCTTATCGAGATGCTTTGTGAGGATCAAGGTTTCTTCCTTGAAATAGTCGACATGATTAGAGGTTTCGGGCTGAATATTTTGAAAGCAAAGATGGATTTAAGGAAGAATAAACTATGGGCGCGCTTTATCGTTGAGGCAAATAAACATGTGACAAGGATAGATGTGTTTTGGTCCCTTCTCCATCTTCTACAACAACCAAACTCTGGCGGAATCGATTCTTCTAATAAGCATAACAATGTTATTGATGTCAACCGTAGCGATTAA 1980 0.4005 MVPLVHLLGEGIVGEAAFKGKYSWLHSVSCEDDFGMFQQFNSGMIKTIVAIPVKAFGVVQFGSRKKVLETRDFLDQAQSLLKEIDEIDVINDSENAVLSMDFTNDDLDGLLASFSSENSCDWNLNSANDENYKDLREVFSPCEERITSLEFEENSCFDSLLHQFLSETMAQEVHDSSLASLQNIAEVSFQEKIQNSMDNVVTEVDLPSSSSILNGISNSLEPVDMLEEFLKFGSVDDLCKWFDPSPDETTICKTMAQLEKTLSEPIEFNPICSDLGLVEKETSVVIHSSENIFLGNTEFDLGSDRGSELWGSLLTPMVNAAGTDNTSFSECVSEINTSTPTDSSRKRLFAELGIEELLRCEANYNNPFSSSNFENAISSNKKQMVEFSPTNRTQVHFANLTGSNLMHPVSDLEDSNSVLTKKDTFSKLQVGISVNDRNSINVKRAVPANAKRPEQPAKHAKKKAKPGESTRRPKDRQLIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLGSVVKYADKLQEPNEPKLLDQANGVIPKDKNHGATWAFEVSNPTMLCPIIVEDMNPPGQMLIEMLCEDQGFFLEIVDMIRGFGLNILKAKMDLRKNKLWARFIVEANKHVTRIDVFWSLLHLLQQPNSGGIDSSNKHNNVIDVNRSD 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06053 659 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 463 512 IPR011598 GO:0046983
Vivi1g06053 659 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 650 IPR043561 GO:0003700|GO:0006355
Vivi1g06053 659 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 4 80 IPR025610 -
Vivi1g06053 659 MobiDBLite consensus disorder prediction 445 477 - -
Vivi1g06053 659 MobiDBLite consensus disorder prediction 460 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06053 Vivi-Chr1 134665608 134668685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06053 7 95 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 34.375 1.54e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06053 - - vvo:131617309 1301.96