LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g06044	ATGGTGCACCCAGATAATATTTCAAGTAAATTAGCTTCTTTAGTTGATGTTAGTGCGAGTATCGATAAGGTGGTCGCAAATGTGGTAGATGTCGGAGGTGAATTTATTAGCAAGCACGACTTTGATGACCGTGAAAGCATGCTAACATGGATTTGTCGGAACACAGTTAACCTTGGATTTGGTGTGGTAATCGGAAGATCAGATAATGGTACCGCAAGAAGAAACCCGTTTGTTACAATGTTGTGCGAAAGAAACGGGAAATACAATCCTCCTCTAAAGAAGTTTAAAAAAGACGACACGGGTACTAGAAAATGCGAGTGTCCATTTAAAATACGTTGTTATATGTTGGCTAGCAAGAAGTGGAGAATATCTGTTATTTTCGGTTTGCATAACCATGAATTGTGCGCAAAATTACAAGGCCACCCTATGGCATGTGGGCTCAATCCGATTAAGAAGGCATCTATTAAAGACATGTCCTTGAATTTTGTCCAACCGAAAAATATACCTGCCACATTGAAAAGGAAGGAACCCGACAACATATCAAACATAGGGCAAGTGTATAATCAACGGTACCGTAATAATAAGGCGATTAGGGGTGATACGAACGAGATGCAACAATTGTTGAAAATGTTGGATGATAACAAATATGTGTCGCGGTACAAAAATTGCGATGATGAGGTTATAGTCTGA	690	0.3942	MVHPDNISSKLASLVDVSASIDKVVANVVDVGGEFISKHDFDDRESMLTWICRNTVNLGFGVVIGRSDNGTARRNPFVTMLCERNGKYNPPLKKFKKDDTGTRKCECPFKIRCYMLASKKWRISVIFGLHNHELCAKLQGHPMACGLNPIKKASIKDMSLNFVQPKNIPATLKRKEPDNISNIGQVYNQRYRNNKAIRGDTNEMQQLLKMLDDNKYVSRYKNCDDEVIV	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g06044	229	Pfam	Transcription factor AFT	93	134	IPR014842	GO:0000981\|GO:0036086

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g06044	Vivi-Chr1	134426617	134427306	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vivi1g06044		AFT	4.2e-06	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g06044	-		-	vvo:131648473	340.502