LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g06028	ATGGGTTCGGGAAGCAGAAGCTATTCTGCGAATCCCAGCGATTACAAGCTTCTAGAAGAAGTAGGTTACGGTGCAAGCGCGACGGTTTTTCACGCAGTTTACCTCCCTTACAACGAGGAAGTAGCTGTGAAATCTCTCGATCTAGATCGATGCAACTCCAATTTCGAAGATATTCGAAAGGAAGCGCAGATCATGAGCTTAATTGATCACCGGAACGTGGTGAAATCGTATTGTTCGTTCGTTGTTGATCATAAGCTTTGGGTTATTATGCCGTTTATGGCGCAGGGTTCTTGTTTGCATCTAATGAAAGCTGCTTATCCGGATGGACTTGAAGAAGATGCTATTGGATCGATTCTTAAGGAAACGCTTAAGGCGTTGGATTATCTTCATCAGCATGGGCACATTCATCGGGATGTTAAGGCGGGGAATATTTTGCTTGATACTAATGGTGAAGTCAAACTTTCTGACTTCGGTGTTTCCGCTTCTATGTTTGATACTGGTGATCGGCAGCGGTCGAGGAATACTTTCGTTGGGACTCCTTGCTGGATGGCGCCGGAGGTGCTGCAACCTGGTACTGGTTATAATTTCAAGGCTGATATATGGTCTTTTGGAATTACTGCACTTGAGTTGGCTCATGGTCATGCACCTTTCTCTAAGTATCCTCCAATGAAGGTTTTACTCATGACCATACAGAATGCGCCGCCCGGCCTTGATTACGATCGTGATAAAAAGTTCTCGAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCGTCCGTGGACAAGTTACTGAAACACTCCTTCTTCAAACAAGCCAAGCCTCCGGAGCTTTCTGTGAAGAAATTATTTGCTGATTTACCGCCTCTTTGGACTCGTGTAAAAGCCCTCCAGCTTAAAGATGCAGCTCAACTAGCACTGAAGAGAATGCCTTCTGCTGAACAAGAAGCAATATCTCAGAGTGAATATAAGCGAGGAGTTAGTGCGTGGAACTTCGACGTTGAAGATTTGAAAGCTCAAGCTTCATTGGTGCAAGATGAAGATGATATTGCAGAGATAACGGAAGAAGATGAAAACAAGTTCTTCAGCTCTAACAGGGATGCAAGTGATTCTCAATCCCGCGTGGACCAGAGAAATTCAGATAACGCACAACAAGACGAGTCCACGTTACAAGTGGGTGGTAATGAGGTATCACAGAGTGATAAAAGAAATGGATTGATTGCTGAGGCATCAGCATCTACTTCAGAAAAGGACGTGGGAACAAGCAAAATTAAAACTCAGGCAGTGAAAGTTGGTAAAACCCAAAGTGGGCCGCTTGTGCCTGGCACAGTGCTTGGTCATTATTTACCCGAAAGAGGACGTCTATTTGAAAGGTTTGAGAATGAAAGTCAGTTATCAGGTGAGAAAAGTAATCGCGATATACGTCGTGCTCCAAGCTTTAGTGGTCCATTGATGCTTCCTAATCGTGCTTCAGCAAATAGTTTATCGGCCCCAATAAAATCCTCTGGAGGATTCAGAGATTCCTCAGATGATAAATCTAAGGCTAATCTTGTGCAAATTAAAGGGCGGTTCTCAGTGACATCAGAAAACTTAGATCTTGTCAAGGATATTCCTGTAAGTTCAGTTTCACGCCGATCTCCACAGGATTCTTCACCACTGAAGAAATCTGCCAGTGTTGGTGATTGGATGGCGGATTTCAAACAGCAAATGCCAATTGGAGTTGGACAGTCTTCCAATGATTCTGCCAATGTGAATATTCCCGCATCTGTTATTGTGCCTCACCTTCACAATCTTTACCAGCAGACGTCTATTCAACAGGATCTTATAATGAATCTGTTAAATAGCTTGCAAACTGCTGAGGCAAATGATGCTTCTCAGAATGGAAAGTTGCCACCAATACCTCGCAGTTCAGAAAATAATGGCAGTGTTGAGACATCAGCTCCAGAGAGAGAACAACTTCTGCTGGCCAAAATTTCAGAACTTCAGTCTCGTGTGACCAGTTTGACAGATGAACTTACTTCTGAGAAGTTAAAACACATGCAGTTGCAACAACAGGTATCTGCTTTCCATAGCCAGGAGCAAAACGGAGAAAGAGAGGAAGGTGCATGA	2127	0.4363	MGSGSRSYSANPSDYKLLEEVGYGASATVFHAVYLPYNEEVAVKSLDLDRCNSNFEDIRKEAQIMSLIDHRNVVKSYCSFVVDHKLWVIMPFMAQGSCLHLMKAAYPDGLEEDAIGSILKETLKALDYLHQHGHIHRDVKAGNILLDTNGEVKLSDFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSVDKLLKHSFFKQAKPPELSVKKLFADLPPLWTRVKALQLKDAAQLALKRMPSAEQEAISQSEYKRGVSAWNFDVEDLKAQASLVQDEDDIAEITEEDENKFFSSNRDASDSQSRVDQRNSDNAQQDESTLQVGGNEVSQSDKRNGLIAEASASTSEKDVGTSKIKTQAVKVGKTQSGPLVPGTVLGHYLPERGRLFERFENESQLSGEKSNRDIRRAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSSDDKSKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSPQDSSPLKKSASVGDWMADFKQQMPIGVGQSSNDSANVNIPASVIVPHLHNLYQQTSIQQDLIMNLLNSLQTAEANDASQNGKLPPIPRSSENNGSVETSAPEREQLLLAKISELQSRVTSLTDELTSEKLKHMQLQQQVSAFHSQEQNGEREEGA	708

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	629	653	-	-
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	371	409	-	-
	Vivi1g06028	708	SMART	serkin_6	15	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g06028	708	FunFam	serine/threonine-protein kinase BLUS1-like isoform X2	96	326	-	-
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	361	409	-	-
	Vivi1g06028	708	Gene3D	Transferase(Phosphotransferase) domain 1	96	325	-	-
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	689	708	-	-
	Vivi1g06028	708	Coils	Coil	664	684	-	-
	Vivi1g06028	708	ProSiteProfiles	Protein kinase domain profile.	15	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	467	518	-	-
	Vivi1g06028	708	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	7	682	IPR047173	GO:0043539
	Vivi1g06028	708	CDD	STKc_OSR1_SPAK	13	276	-	-
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	467	481	-	-
	Vivi1g06028	708	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Vivi1g06028	708	MobiDBLite	consensus disorder prediction	492	509	-	-
	Vivi1g06028	708	FunFam	Serine/threonine-protein kinase BLUS1	4	92	-	-
	Vivi1g06028	708	Pfam	Protein kinase domain	15	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g06028	708	SUPERFAMILY	Protein kinase-like (PK-like)	13	327	IPR011009	-
	Vivi1g06028	708	Gene3D	Phosphorylase Kinase; domain 1	4	92	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g06028	Vivi-Chr1	133940281	133955496	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g06028	8	700	MAP Kinase Kinase Kinase Kinase	AT4G10730	65.670	0.0	897

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Vivi1g06028		Pkinase	3.1e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g06028	-		-	gmx:100783699	1157.9