Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06016 ATGAAGGGGCGGTCAAATCGCCCTCAGCATATGGACCCTCCGCCGGACGAATGGGTCGACGGTTCATGGACAGTGGACTGCATCTGCGGCGTCACCTTTGACGACGGCGAAGAGATGGTAAAGTGCGACGAGTGCGATGTGTGGGTTCACACGCGCTGTTCTCGGTACGTCAAAGGTGATGACATGTTCGCTTGTGACAAGTGTAAGGCCAAAAACAACCGTGCCGGAGCAGACAACAACACTGAGGAAACCGAGGTTGCTCAATTTTTGATCGATCTTCCGACGAAGACGATCTCTCTTGAGAGAAGGAATAATAATAATAATAACAGAAGTAGTTCTCTTTCTTCCAGAGTTGCGTCGTGTTCGCGCCGGCCGTTTAAGCTTTGGACTGATATACCTATGGAGGAGAGGGTTCATGTTCAGGGTATTCCTGGTGGGGATCCTTCTCTTTTTGCTGGTAAGACGATGTCTTCGATTTTCGGTCCGCAGCTGTGGAAATGCACTGGTTATGTTCCTAAGAAGTTTAATTTTCAGTATAGGGAGTTTCCTTCTTGGTATGAGAATGATTCGGATAAGGGTGGCCAAGAAAATGATACTGATGTTAGGGATAAGGATAATGGGGCTGGGGTTCTTTTATCATTTTCTAAAGAGACTAATAACGTGTTAGCCACATCCACATCGCCTGTCGCGGCTTTGGTGGGTATGAAATCGAGCCAGGGTAAGAAGGGTTTCAAGGAAAATGGAACGGGCAAGGTTCGCAAGGATCATATGCCACGTGTCCACAATGCGGACAAGAAGGAGAGGACTTTGCTTAGCCCTTCTGCTGTTCATTCGAGTAAGCGTAGGAAGGATGAGTTCTCCAAGGACCGGAGTGGGAAGAAGAAGCGGGTCAAGACTACTGAGAGAGATGCTGCAGATCTCAAGAGGAGAACTTCTGACAGAGAAGATGTAGATCCCAAGAGGAGGAGTTCTGATAGAGAGGATGTAGATCCCAAGCGGAGGACTTCACATTCTTCTAAAGCAGCGTTTACATCAACCAGTGATGCAAAACAATTGGCATTTTATGGAGGCAGAGGTCCGAAGGTTTTCAAAGATGACATTCGAAGCATAAAGAATAAAAACTTAAAAGACTCGGTGGCTCGAGATCATATCTCAAATGATTCTTTTGCTGGGGGTATCATCATGGAGGCATCAAATAACAACAACTTGACAACGACTGAGGAGTCTTCAGAAGCCTTATATCCTAACAAAACTAGACAAAGTCATTCTGCTGGAGATGTATTAGCAGAAGGGAAGACTGGCCATAAAGTTCTTGAGATTTCTTCTAAGACTGATGATGCCGTTACATCAGTTCTAAAGCAAACTAATCTTGAAAATGCCTCAGCTAAAAAGAAGGGTGGAGATTGCTTGGAGGCTAATAATGTAGATGGTACTTTAGTAAGAAGCCCTGCGAGTCCTCAGACAGAAGATCATTGTGGCTCTGCACCAGAACGTATAGGAAAGCAAGTTTCTCAAGATATTGACTGCAACCAGAAACCAAGCTCTGGGCAATGCAAAGTTAAGGTGAAGAGAGAAGAAGATGAGGATGATAAGTTTAAGCTTTCAAATTTTCATTCTTCTCCTATCAGCGGTCTTAAAAACAATGGAAAGCCAACCGATCCCACATCTGTTACTGATAAGGTCAATGATGCTGCAGTTCTCAGTTTACCTTTATGTGAAGCTAAGGTAGGCAATATTGGCATATCATCAGAAGTACTCCCAGATAATCATACCAACGAACTCAATGAATTGCCTGGTGATTTTTGTCGTGGAAAAGAAGAAGTGGAGGGGTCTGAAGGTTCATTGGAAACACAAAAGGGATTTTCAAAAACAAAAGATGGTCTGGGCTCTTCTAAGAATCCATCTAAATCTGAAGCATTTGAATGTCCAAGTAAAATGCTAGCTTCTGGCGGAAAGTCCTCTCCCACTTCATCAACCTTGAACTCCAAATCATTGAGTCATGACTTCAAATCTGAAGATACTGAAATCGCCAATCCTTTTACGAAGCATGGAGCCAAATCTGATCGTAACAATTACATGAAGAGTGAAAGTTGTATGAATGATGCTGCAATGGATGAAATTCCAAGGAAGTCTGTAAAAGATCGTCCAAAATCTTCTTTGAATCATAATTCCAAAGGACTGCATTCAAGCCGGAGTATGCAAAGTTCCGTTTCAAAGCAAGTAAATCCAGATGTGAGAGATTCTGTTCACTGTTCATCAACGAAACCATCCCTGGGTCACCAGACTCCAAGTGTTTTTGGCTCTAGTGAGACTAATGCATCAATACACCATCAAAAAGGACCGCAAGTGCAGAATAAGATTTCATCTTCAGTGCCACAGAAAGTAGAAAGGCTTAATCAAACAAATACCCATCCTTCCTCGAAGTCGAACCAGAACAACACACCATCATTGAATCCTTCTCCAACATTAAATTCTTCAATGCTGAGTGATGAAGAGCTAGCTTTGCTGTTGCATCAAGAACTGAATAGTTCACCTCGTGTACCCCGGGTACCCCGTGCACGCCAAACAGGTAGCTTGCCACAGCTGACTTCTACTAGTGCTACAAACATGCTAATGAAGCGAGCATCGGTTGGAGGAAAGGATAACTATTTGGTATGTAAAAGAAAATACAAGGATGCAACTAGAGATGGGGTTTGCAGTTCTCGTGAACCAGAAGATGAAACTAAAAGGATAGAGAAGGAGAAGGAGAAGGAGAAGGTTCAATCATCATCTGATCAAAGAAAACAAGACATGGCATATGTGGAAGATGCTTCTGTAAAGGAAGAAGGAAGCCGAGCATGCGTGACAGCTGCAAACTCTATTACAAGCAATGTTGTGTCCACAACCCCTGCCACTGAAAACAGCAGTCCACCTTCCCCTCGCGAGGACTGTAATTTGTCATCAAAGAGGAACTCACCCAGGAATATATCTGATGATGATACACCAACAGCTGGAAGGCCAGTTCATCACACCTTACCTGGCTTAATCAATGATATAATGAGCAAGGGCAGGCGCATGACATATGAGGAACTCTGTGGTGCTGTGCTACCGCACTGGCCCAACTTGAGGAAACATAACGGAGAACGATATGCATATGCAAGTCATTCCCAAGCTGTTCTTGATTGTTTGAGGAACCGGCATGAATGGGCAAGGCTGGTTGATCGCGGTCCAAAGACAAATAATACTACTAGGAAAAGGCGAAGTAAGCTCGATGCTGATGAATCTGATGATAATGGATATGACAAGGGAAAAACTGCAAAAGACGCCGAAGGGAAGAACTTGGAATTGCAAAAAGAAGAGTTTCCTAAAGGTAAACGCAAAGCTCGAAAACGCAGGCGGCTGGCTCTTCAGGGAAAAGCAATAAAGGATGTAAGAAGGAAACAAAAAGCTGACTCACTTACTGGCGAAGACGTAGGTCCATTCTCCAATACCAGTGAAGAGAGCTTGTTTAGCGAGGATGGAATTCAAGTTGACAGAATATGTCCAGCAGGAAGTACATCGGATGAGGCTGGAAGTGCTTAA 3561 0.4389 MKGRSNRPQHMDPPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKAKNNRAGADNNTEETEVAQFLIDLPTKTISLERRNNNNNNRSSSLSSRVASCSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGKTMSSIFGPQLWKCTGYVPKKFNFQYREFPSWYENDSDKGGQENDTDVRDKDNGAGVLLSFSKETNNVLATSTSPVAALVGMKSSQGKKGFKENGTGKVRKDHMPRVHNADKKERTLLSPSAVHSSKRRKDEFSKDRSGKKKRVKTTERDAADLKRRTSDREDVDPKRRSSDREDVDPKRRTSHSSKAAFTSTSDAKQLAFYGGRGPKVFKDDIRSIKNKNLKDSVARDHISNDSFAGGIIMEASNNNNLTTTEESSEALYPNKTRQSHSAGDVLAEGKTGHKVLEISSKTDDAVTSVLKQTNLENASAKKKGGDCLEANNVDGTLVRSPASPQTEDHCGSAPERIGKQVSQDIDCNQKPSSGQCKVKVKREEDEDDKFKLSNFHSSPISGLKNNGKPTDPTSVTDKVNDAAVLSLPLCEAKVGNIGISSEVLPDNHTNELNELPGDFCRGKEEVEGSEGSLETQKGFSKTKDGLGSSKNPSKSEAFECPSKMLASGGKSSPTSSTLNSKSLSHDFKSEDTEIANPFTKHGAKSDRNNYMKSESCMNDAAMDEIPRKSVKDRPKSSLNHNSKGLHSSRSMQSSVSKQVNPDVRDSVHCSSTKPSLGHQTPSVFGSSETNASIHHQKGPQVQNKISSSVPQKVERLNQTNTHPSSKSNQNNTPSLNPSPTLNSSMLSDEELALLLHQELNSSPRVPRVPRARQTGSLPQLTSTSATNMLMKRASVGGKDNYLVCKRKYKDATRDGVCSSREPEDETKRIEKEKEKEKVQSSSDQRKQDMAYVEDASVKEEGSRACVTAANSITSNVVSTTPATENSSPPSPREDCNLSSKRNSPRNISDDDTPTAGRPVHHTLPGLINDIMSKGRRMTYEELCGAVLPHWPNLRKHNGERYAYASHSQAVLDCLRNRHEWARLVDRGPKTNNTTRKRRSKLDADESDDNGYDKGKTAKDAEGKNLELQKEEFPKGKRKARKRRRLALQGKAIKDVRRKQKADSLTGEDVGPFSNTSEESLFSEDGIQVDRICPAGSTSDEAGSA 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 615 638 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 186 205 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 958 1006 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 536 557 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 507 557 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 894 942 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 583 867 - -
Vivi1g06016 1186 SMART PHD_3 26 69 IPR001965 -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 599 613 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 958 985 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 1067 1186 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 246 337 - -
Vivi1g06016 1186 SUPERFAMILY FYVE/PHD zinc finger 16 72 IPR011011 -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 722 829 - -
Vivi1g06016 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 76 IPR013083 -
Vivi1g06016 1186 PANTHER UNCHARACTERIZED 1 1178 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 649 665 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 238 347 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 1130 1146 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 1067 1116 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 518 535 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 1150 1164 - -
Vivi1g06016 1186 MobiDBLite consensus disorder prediction 706 721 - -
Vivi1g06016 1186 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06016 25 68 PHD Transcription Factor Family AT5G22260 44.681 9.11e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06016 - - gmx:100810855 1382.85