Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06005 ATGAGGTCATTAATGGGGACTGAGCTTATGCGGATATGTGTTAAAGAAGATGATGATTTCCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCGCACTGAAGAGGGTGGAAGAGAATGAGAAACAAAATGATAAAAATCTGACGAGTTCCTCTACAAGTGCTTCTGAATCACAGTCAACTCCGGTTGGAAATGGTGTTCAATTTAGTGATACTGCAAAGGTTTCTAGATCCCTTCGACGAAGACCATGGATTAACCATGGAAAGTGTGAGAACGGTTCTGATGAAGACTTTGATTCTGAGCGGCATGATCAAAATTTCTCCTCGAGACCTTGTCTTCCTAAAGGAGTCGTTAGAGGATGTCCAGATTGCCGTAATTGCCAAAAGGTCATTGCCAGATGGAAACCAGAAGATGCTCATACGCCTCATCTCGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCAAGTATTCGCTCAAAAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCTCGTTCATGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTAATTCAGGGGCAAAGAAGTCAAGGATTCAAAATAATATGAAAAGGAAGAGGAGATGCACAAGAATGGGAGTAGATAATGGCACTGGAACAGACACTAATGCAGTATTTTGTGAAGCTGAAACGTTTGGGTTTGAACCCGGCCCAGAGTTTACCTTGGAAACATTTAAGAGATATGCAGACGAGTTTAAGGTCAATTACTTCAGAAATGATAATTTATCTCATCCAAGTACTAATACAACAATTTTAAATGGTACCTCGGATCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTTCCCAGCAAGTCTAGTCAAGTTTCTGGTTCATATGATCAATACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCATTTTGTTGGCATGTGGAAGATCACCATCTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGCAAAAGATGCGTGCAAATTGGAAGAGGTCATGCGAAAGCATTTACCTGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCTAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCCGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACATATTGCTATAGAGCTCTACCGGGAGCAGGGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGCTTGCTTTACTGAAGAAAAACACTTCGGATAATCTAAAATGGCAAGATGTCTGTGGAAAGGATGGTCTTTTGGCGAAATCATTCAAGGCACGTGTTGAGATGGAGCGAGTAAGAAGGGAATTTCTTTGCAGTTCTTCAAAGGCATTAAAAATGGAGAGTAGTTTTGATGCTGCAAGTGAGAGGGAATGTAACATCTGCTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCATTGTTCCTCAGATAGATATTCTTGCTTGGATCATGCAAAGCAATTTTGTTCATGCTCTTGGAACTCCAAATTTTTCCTCTTTCGCTATGATATTAGTGAACTAAATGTTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAGTTACATCTTGGGCTGGCACTAACTTCTTATGTCTCAGTTGATAAAAAACCAGTAGTTCAGGGATTGAAATTGCATTCATCCAACTCGTTTCATTCTTCCCGGGTCAATATGAATAAAGAGATGGCTTTGCTTCCATCAAATAAATTTATTGACAATTCTCAATTGACAGATGCTTCAATAGTGGATCAAGCAACTTCAGCAAATAGCAAGGATCAGAGCTATCTTAAACAGACGAAATCAGAAGAAATTGTGTCTCCTTTGAGTCACACGAAGGAACTATCAATATTTAATAGCTCTAAACCTACATGTGAAATAGCTAATAGTAAAATCCGTGTTATTAAAGAAGAATCTGTTATTTGCAAATCAAAGCCAAATGCGCCTGTTTGTCAATTAAATGAAGAGGATTCTTCATATGCTTTATCTCCGCCTCTAGCTCAACAAGAAAATGAGAAAAGTTCACATGGTAGATCTGATGATATCATACTTCTTAGTGATGATGAGGATGAAGAAATGAAGATGCCTGATTCAAAGAGAAAGAAGGAGGTTCCTCAAATGCTTGCTGGTTCTAGAAATAAAGCAAGCCTGTGTAATGATATAGAATATAAAAGCTTGACCATCCCTTTGACAGGTGCTTCTGTGGTGGGTGAGAAGGAGGCTATTATGTTGCCTCGTGAAGATCCGGGTTCGTGTTCTACTCAGCTTTTGCATGTGAAACAAGAACCTCGTGAACAGAGAGGACCAAATCTACCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTGGTGCAGAATCAGTAAGGAACATTCCAGCTTCTGCAAGAGTAGAGGCAGGTGATCAAAGTTTGAAAAGTTTGGAGGTTTGCCCTCTGAAACCACAGCCTTCTGGCACTATTAAGGCTATGAGCGAGGATAATCATGAGAAGTTAGGTGGTTGTTCCACTTCTAAATCTAATGTAGCAGATAATGCAAGAGCTATTAATGGAAACATCTCGTGTGGTCCAAACAATTACCGTCAGAAAGGTCCCCGTATTGCAAAGGTTGTACGTCGTATCAACTGCAATGTTGAGCCTTTGGAATTTGGAATTGTATTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATTTTTCCAAAGGGATTTAGAAGCCGTGTTCGTTATATAAATGTCTTAGATCCATGCAGTACATGTTACTACATTTCAGAAATTCTTGATGCTGGACGCGGTTCGCCTCTATTTATGGTTTCCTTGGAGAATAGTCCAAATGAGGTCTTCATTCATATGTCAGCAACAAAATGCTGGGATCTGGTTAGAGAGAGAGTGAATCTAGAGATAGCAAAACAACATAAGCTGGGAAAAAAAGGTCTTCCTCCTTTACATCCTCCTGGAAGCCTTGATGGCTTTGAAATGTTTGGATTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTAGATCGAAGTCGAGTTTGTAAAGAATACTGGGACTCTCGGCCATTCTCTCGGCCTCAAGGGCAGCTTTCACAAGCTGGGCAGACCACTGTGAATGGTGGAGGTGGGAACGATCAAGGGGTTCCCATGAATCCGCATACACCCATTGGAACTGTTGCAGCAGTAAAGAGCCTATTTAAAAAGGCGAATGCAGAAGAATTGAACTCTCTGTACAGCATTCTTACTGACAGTAAGCCAGCAGCCGAACAGATCCCAATCACGCAAATTCTCTTAGAAGAAATTCACAAAACCCAACCACCCTAG 3792 0.4124 MRSLMGTELMRICVKEDDDFPSVPPGFESYTSFALKRVEENEKQNDKNLTSSSTSASESQSTPVGNGVQFSDTAKVSRSLRRRPWINHGKCENGSDEDFDSERHDQNFSSRPCLPKGVVRGCPDCRNCQKVIARWKPEDAHTPHLEDAPVFYPTEEEFQDTLKYISSIRSKAEPYGICRIVPPRSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGAKKSRIQNNMKRKRRCTRMGVDNGTGTDTNAVFCEAETFGFEPGPEFTLETFKRYADEFKVNYFRNDNLSHPSTNTTILNGTSDPSVENIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVSGSYDQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPAKDACKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELALLKKNTSDNLKWQDVCGKDGLLAKSFKARVEMERVRREFLCSSSKALKMESSFDAASERECNICFFDLHLSAAACHCSSDRYSCLDHAKQFCSCSWNSKFFLFRYDISELNVLVEALEGKLSAVYRWAKLHLGLALTSYVSVDKKPVVQGLKLHSSNSFHSSRVNMNKEMALLPSNKFIDNSQLTDASIVDQATSANSKDQSYLKQTKSEEIVSPLSHTKELSIFNSSKPTCEIANSKIRVIKEESVICKSKPNAPVCQLNEEDSSYALSPPLAQQENEKSSHGRSDDIILLSDDEDEEMKMPDSKRKKEVPQMLAGSRNKASLCNDIEYKSLTIPLTGASVVGEKEAIMLPREDPGSCSTQLLHVKQEPREQRGPNLPSTPVDLSFHIGLTGAESVRNIPASARVEAGDQSLKSLEVCPLKPQPSGTIKAMSEDNHEKLGGCSTSKSNVADNARAINGNISCGPNNYRQKGPRIAKVVRRINCNVEPLEFGIVFSGKSWCSSQAIFPKGFRSRVRYINVLDPCSTCYYISEILDAGRGSPLFMVSLENSPNEVFIHMSATKCWDLVRERVNLEIAKQHKLGKKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCKEYWDSRPFSRPQGQLSQAGQTTVNGGGGNDQGVPMNPHTPIGTVAAVKSLFKKANAEELNSLYSILTDSKPAAEQIPITQILLEEIHKTQPP 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06005 1263 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Vivi1g06005 1263 SMART cupin_9 357 520 IPR003347 -
Vivi1g06005 1263 ProSiteProfiles JmjC domain profile. 357 520 IPR003347 -
Vivi1g06005 1263 Gene3D Cupin 133 504 - -
Vivi1g06005 1263 Pfam JmjC domain, hydroxylase 387 503 IPR003347 -
Vivi1g06005 1263 Pfam F/Y rich C-terminus 1090 1173 IPR003889 GO:0005634
Vivi1g06005 1263 SUPERFAMILY Clavaminate synthase-like 355 548 - -
Vivi1g06005 1263 ProSiteProfiles FYR domain FYRC motif profile. 1087 1177 IPR003889 GO:0005634
Vivi1g06005 1263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 143 1127 - -
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 47 73 - -
Vivi1g06005 1263 SMART fyrc_3 1091 1185 IPR003889 GO:0005634
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 91 110 - -
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 91 109 - -
Vivi1g06005 1263 Gene3D - 1035 1171 - -
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 1180 1200 - -
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 1180 1210 - -
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 848 863 - -
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 841 864 - -
Vivi1g06005 1263 FunFam Putative lysine-specific demethylase JMJ16 1033 1171 - -
Vivi1g06005 1263 Pfam C5HC2 zinc finger 610 660 IPR004198 -
Vivi1g06005 1263 SMART JmjN_1 147 188 IPR003349 -
Vivi1g06005 1263 SMART fyrn_3 1041 1085 IPR003888 GO:0005634
Vivi1g06005 1263 ProSiteProfiles FYR domain FYRN motif profile. 1027 1085 IPR003888 GO:0005634
Vivi1g06005 1263 Pfam jmjN domain 149 182 IPR003349 -
Vivi1g06005 1263 Pfam F/Y-rich N-terminus 1041 1082 IPR003888 GO:0005634
Vivi1g06005 1263 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06005 Vivi-Chr1 133194677 133206265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06005 5 1258 JUMONJI Transcription Factor Family AT1G08620 54.334 0.0 1226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1g06005 JmjC 1.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06005 K11446 - gmx:100800271 1961.81