Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05993 ATGTTTTACAACGATGAAGACAAGGGCAAGCCGATGGTTCAACTGACAATGATTAACAGGAATGAACTCCCCATTACATGCACTTTGTCAGATGGATTTCATTCATGTTATGGCATTATTGCACCGAGCGTTGATGAGTCACTAATTAGTCAGCTGAAAAGTGGGGCCATGATTCATTTGACCTCTTTCTTAATTGTCAACTACTTGAAGAGGATTATTTCCATTGAACGGTTTGTGGTTGTGTATGCTGACAATGCAATTGTTGGTAATCCAAAGCTATTGCCCTGGTATATTGCAGTTAGGGAAATTAAACCAGCTCTTCCACAACCTATAGCAATCATTGGGAGGGTTATAGCTAAGTCTGAAATGTATAGCCAAATGAATGAAGAAGGAATCAATGCACCATATTCATTCTATTTCGATGTTATTGATCAACATTATGACAGGGTTCGAGTTACATGTTTTGGGCGGGACAATGTTGAAAAGTTTTATCCCAAAATTATCGAAGACGAGATTTACTCAATTGTAGCAGTGGACCTGAAAGTAGCCAACAAAAGGTACAACCTTCTACATCCCTATGAACTAATAATTACTTCTGCAACTTCAATTGAGAAGTTTGATGATGGCAATATGAATATACCAACACACTTACACAACTACATAACTGTGAGGGGCTTGAGTGGATTGGAAGTTAAGACCGTGTTAGATTTCATTGCCATAGTTGTCCGGGTAGGTCCTATACAGACAAAGGAGAAAGATCGGAGAGTACTGTTGCTTCAGGATCCTACTGGTCAAGTTAATATCACATTATGGGGGCATCATTGTGAAAAGACGCCTCCAGAATTATCTGTGGTTGCATTCCAAAGTGTGAGCCTAGAAGAGTATAAGGGAATTCGAAAATTGAGTACAACCGGTATCTCACGACTATGGGTTGAGCCTCCGTTTGCAGAAGCTACCCGTATAAGAAACTGGTACACCCGTAGAAATCAAGCTCAGTCTCTTGGCGAAGAACCAGAGGAAGAGGAAGGACCTAATGCTACAAAGGTTTTGGTACGGTTTCCAAATGGCGAACGCAAGGAAAGGAGGTTCAACAGCACAGTGACAGTTCAATCATTGTATGACTATGTCGATTCCTTGGGCTGTTTAGAAGAGAATTACACCCTAGTCTCTAATTTTCCTAGGGTTGTTTATGGAGAAGAAAAGTTGAGACTGTCATTAATCGAAGCAGGATTGCATCCTCAGGCCACCCTATTTGTGGAGCTTGCCAGATAA 1272 0.4088 MFYNDEDKGKPMVQLTMINRNELPITCTLSDGFHSCYGIIAPSVDESLISQLKSGAMIHLTSFLIVNYLKRIISIERFVVVYADNAIVGNPKLLPWYIAVREIKPALPQPIAIIGRVIAKSEMYSQMNEEGINAPYSFYFDVIDQHYDRVRVTCFGRDNVEKFYPKIIEDEIYSIVAVDLKVANKRYNLLHPYELIITSATSIEKFDDGNMNIPTHLHNYITVRGLSGLEVKTVLDFIAIVVRVGPIQTKEKDRRVLLLQDPTGQVNITLWGHHCEKTPPELSVVAFQSVSLEEYKGIRKLSTTGISRLWVEPPFAEATRIRNWYTRRNQAQSLGEEPEEEEGPNATKVLVRFPNGERKERRFNSTVTVQSLYDYVDSLGCLEENYTLVSNFPRVVYGEEKLRLSLIEAGLHPQATLFVELAR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05993 423 Gene3D - 343 421 - -
Vivi1g05993 423 Pfam Replication protein A OB domain 226 310 IPR031657 -
Vivi1g05993 423 SUPERFAMILY Ubiquitin-like 324 420 IPR029071 -
Vivi1g05993 423 Gene3D - 97 208 IPR012340 -
Vivi1g05993 423 SUPERFAMILY Nucleic acid-binding proteins 99 210 IPR012340 -
Vivi1g05993 423 Gene3D - 211 335 IPR012340 -
Vivi1g05993 423 SUPERFAMILY Nucleic acid-binding proteins 219 326 IPR012340 -
Vivi1g05993 423 SMART ubx_3 338 421 IPR001012 GO:0005515
Vivi1g05993 423 CDD RPA1_DBD_B 234 325 - -
Vivi1g05993 423 PANTHER FAS-ASSOCIATED PROTEIN 319 420 - -
Vivi1g05993 423 Pfam UBX domain 342 420 IPR001012 GO:0005515
Vivi1g05993 423 CDD RPA1_DBD_A 109 204 - -
Vivi1g05993 423 ProSiteProfiles UBX domain profile. 342 419 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05993 Vivi-Chr1 132838031 132840224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05993 91 327 Core DNA Replication Machinery Family AT5G45400 29.699 3.75e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05993 K18726 - vvo:131617142 843.958