LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g05986	ATGGAAAACAACAACAACAAAAGCCAAAAAATGAATTCTGAAACTGGCCCCTCTTCCAATCACAGCACTAGGGAGAACATGCTTCAGTTCGATTTAAATGAACTTCCTGATTCTGATTATTCTGAGGATTCTGCGGAGGATTTTCATGTGGCAACAAGAGAAGATGCAGCTCCTCAAGATGATGATGAAGTTCAGAAATCAGCATCTGATTTCTCATTCCCTATTCTCGAAGGACGTGTTGCTTCAGAAGATGAAGTGAGTGTGGAAAACTATAAGAATCCAGTGGTGAACTCAGATGAAATTCGTAGGGCTTTGAAAGGGAAAATGCCTATGAATTGTTCTGAAGGAGGTTGTTCCAAAGAAGCTGCTGCTTATATTGATGCCGCCGCTGCTGTTCTTGGTGATGATGATGATGATGATGAAGTAGTGAAAGATATTTCAACTGATGAGGATGATGAAGTTCCTTCCGGCGATGAAGGCAGTGCCATTGAAGGAATCTTGATGCTTCATGAACAAGATCATAATGCTGCTAGTGGATCTTGTCCTCAAAGTTGCAGCAAGAGAAAAAGAGATTTCTCCGAATACTACAAACCACCTTCCACTAGGATTGGTGGAGCTGGACCGAAAACTGTGATCCAAGTCGAAAGCAACCAAGATATAGTTGATGATGGTTATCGCTGGCGCAAATATGGACGCAAAGAAATCAAAGGAAACCCTAATAACCCTAGGGGATACTATAGGTGCACATCACAAACTTGCGCTGCAAGAAAACAAGTTGAGAGGGATGCGAAAAACTCAAAGTATGTCATTGTTTCATATGAAGGAATACATAACCATGGATTACCACCCATCAAACAAAAGATCCCACCACCACCACCACCACCAGTACCAGCACCAACACCAGCACCAGCACCAGCACCAACACCAACACCGTTAAGCAATACCACTACACCTGCAGTTCATCCGAATACGAGCAAGCCATCGCGACCAATACTTCCATATCCATCTGCTAACTCTCTCCCCCCTTACCCTCACTATGGAAACTTTGGATTTTTTCCCGGTTACAGACCTTATGGGATGATGAACTATATGTGGCCTAATAACAATCATTTCTACAACATACCTCATAAGAGTAACATGGCTGTTCCATCTTATGGCACCGTTAGTCCTTTAAATTTTCAGAACCATTTTTCTACTTCTTTTGCTAACCCTCAAAATTCTATACCTGGGCCTGCTACTGGTAGAGCGACACCTTTTTCTGGTTTTCCAATATCACCATCACTTCCACCTTTTGATACTGTACCTTATGGTCATGATTATCTTCATATTCGTGGGTATACTACTTCTGCTGCTGCAGCTGCTGCTACTACTGCTCAACTCTTTCCTTTGCGAGAACCTACTACTGCTCAACTCTTTCCTTTGAGTGATCCTACCACCCCAGCTGAGGAAGAAGACAAGGATGTTGTTCCTGAAAAATGA	1479	0.4266	MENNNNKSQKMNSETGPSSNHSTRENMLQFDLNELPDSDYSEDSAEDFHVATREDAAPQDDDEVQKSASDFSFPILEGRVASEDEVSVENYKNPVVNSDEIRRALKGKMPMNCSEGGCSKEAAAYIDAAAAVLGDDDDDDEVVKDISTDEDDEVPSGDEGSAIEGILMLHEQDHNAASGSCPQSCSKRKRDFSEYYKPPSTRIGGAGPKTVIQVESNQDIVDDGYRWRKYGRKEIKGNPNNPRGYYRCTSQTCAARKQVERDAKNSKYVIVSYEGIHNHGLPPIKQKIPPPPPPPVPAPTPAPAPAPTPTPLSNTTTPAVHPNTSKPSRPILPYPSANSLPPYPHYGNFGFFPGYRPYGMMNYMWPNNNHFYNIPHKSNMAVPSYGTVSPLNFQNHFSTSFANPQNSIPGPATGRATPFSGFPISPSLPPFDTVPYGHDYLHIRGYTTSAAAAAATTAQLFPLREPTTAQLFPLSDPTTPAEEEDKDVVPEK	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	468	492	-	-
	Vivi1g05986	492	Pfam	WRKY DNA -binding domain	222	279	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g05986	492	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	18	314	IPR044810	GO:0003700
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	1	29	-	-
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	284	312	-	-
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	1	73	-	-
	Vivi1g05986	492	Coils	Coil	491	492	-	-
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	136	159	-	-
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	280	333	-	-
	Vivi1g05986	492	SMART	WRKY_cls	221	281	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g05986	492	Gene3D	WRKY domain	206	283	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	136	158	-	-
	Vivi1g05986	492	ProSiteProfiles	WRKY domain profile.	216	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g05986	492	SUPERFAMILY	WRKY DNA-binding domain	215	282	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g05986	492	MobiDBLite	consensus disorder prediction	42	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g05986	Vivi-Chr1	132216344	132218827	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g05986	208	285	WRKY Transcription Factor Family	AT5G56270	56.410	1.36e-23	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi1g05986		WRKY	9.7e-22	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g05986	K18835		-	psat:127093336	763.837