Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05927 ATGAAAAAGGAATCCGAAGTAAAAAAGCCACGATCACGAAGAAAAGGAGGACCAGAGAATGCATTATGCAATTACAAAGGAGTGAGACAAAGGACTTGGGGAAAATGGGTTGCTGAAATAAGAGAACCTAAGGGTGGTGCTAGGCTTTGGCTAGGAACTTTCAACACTTGTATTGAAGCAGCACTTGCTTATGATGCTGCTGCAAAAAGGCTATATGGTGAATCTGCTAGGCTCAATTTGGCACCACCAAAGGGTGCTTCTACAACAACAAGTATAGAGGTTTCAAATGATAACAACTGTAGAGAAGAGATTTCAAATGATAAGAATAATGAGGTGTTGTGGGAGATTCCATGGAGTACTAGTGATTTTGTTGTGGATGATTTTATGGAATTGAATGATACTGTGCTGGCTCAAGGGCTTAAGGATTGGGATCCATCATTACTAGAGATTTAA 453 0.3996 MKKESEVKKPRSRRKGGPENALCNYKGVRQRTWGKWVAEIREPKGGARLWLGTFNTCIEAALAYDAAAKRLYGESARLNLAPPKGASTTTSIEVSNDNNCREEISNDKNNEVLWEIPWSTSDFVVDDFMELNDTVLAQGLKDWDPSLLEI 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05927 150 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g05927 150 Gene3D AP2/ERF domain 24 81 IPR036955 GO:0003700|GO:0006355
Vivi1g05927 150 MobiDBLite consensus disorder prediction 1 16 - -
Vivi1g05927 150 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Vivi1g05927 150 SUPERFAMILY DNA-binding domain 24 80 IPR016177 GO:0003677
Vivi1g05927 150 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vivi1g05927 150 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vivi1g05927 150 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vivi1g05927 150 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vivi1g05927 150 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Vivi1g05927 150 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 103 - -
Vivi1g05927 150 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05927 Vivi-Chr1 130923852 130924434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05927 13 98 AP2-EREBP Transcription Factor Family AT1G75490 64.835 1.09e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g05927 AP2 9.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05927 - - mtr:11435109 215.312