Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05925 ATGAATTGCTTCCCGTGTTGTGGCCCTCAGAAAAATAAACAAAGTAATAGTAAGAGGGAGCATGGTACTACAACAACGCAGGAAGTTACTTCTGCATCAAAAGCACCCGATATGAAGAAACAAAGGGGGGATGAGCAAATGCAAGGAGACGCGACGAATATTAACGCGCAAAATTTCACTTTTCGTGAGCTAGCGACAGCGACAAAGAATTTCCGCCAGGAATGTCTTCTTGGTGAAGGAGGCTTTGGAAGAGTCTATAAAGGGGTTATTCCTGCAACTGGACAGGCCGTGGCTGTTAAGCAACTCGACAGACATGGGACAGAAAACAGCAAGGATTTTCTGTCTGAAGTTGCTCTGCTGAGTCATGTTCATCATGAAAATCTTGTCAGTCTCATTGGTTATTGCGCTGATGGCGAACAACGTCTTCTGGTATACGAATACTATCCTGCCTATACTCTTGAAGATCGTCTTCTTGGGAATAGACCGGATGAGCCGCCATTGAATTGGTTTGAAAGAATGAGAGTAGCGGCAGGTGCATCTAAAGGACTAGAATACTTGCATGATAATGCCAATCCACCGGTTATATTCCGCGACTTGAAAACATTCAACATCTTGTTGGGTACTGAAAATGATCTTAATGCGAAACTATATGATTTTGGATTGGCCAAGCTTTGTGGTGGAGACAAGATGAACAATGCACCTCCAAGAGTTATGGGAACATATGGTTATTGTGCTCCTGAATATACAAGAACAGGTCAAGTTTCCTTGAAATCAGATGTATACAGTTTTGGAGTTGTCTTGCTTGAACTTATCACTGGTCGACGCGCCGTTGATACCACAAAGCCTAACGAAGAGCAAAATCTAGTTTCATGGGCACAACCCTTATTTAGGGACCCGAAAAAGTATCCAGATATGGCGGATCCACTTCTCAATAAGCATTTTCCAGAAAAGGATCTTAATCAAGCGGTTGCAATAGCAGCAATGTGCTTGCAGGAGGAACCAGAAGCCCGTCCTTTGATCGGTGACGTTGTAACCGCTTTGAGTTTTCTATCGACGGCTCCAACGGAACCTATTCCACCACCTTCACTCCCCACTGCCACCTCTAGGCATAGCACTGCTACTGAAAGCGAATATGACAGTGAGAGTGAATCAGAAGGAGAAACTTCAGATGATGAAGACACTGACTATGAGGAAGACAATGAAACTGCTCAAAATCATGTCGCAGCCGGTGAAAAATCTCAGAAAAGGGCGACTTCGAAGAAATCAAGCCGAAAAAGCAGCACAAAATCAAGGAACGAAACTACTAGTAAAGATTCAGCAGAGGGAAGTGCTTCTTCCAGTGGCAAAACCAGTAGAAAATGGCAAAGCTTTGTTGGTAATTTAAGCCAAAAGTCAAACAGCAGCTCAAAAAAATCTTCTATCAAAGAAATAAGCCAGAAGAGCAGCAAAAAAACTTCAATCAAAGAACTATGCCAAAAAAGCAGTAGAAAATCTTCCAACAAAGATTTAAGCCATAAGAGTAGCAGAAAATCATCTGCTAAAGTTTCGAGTCGCATGGAATCGGAAGATGGAAGCATGAATTCGTTTCATAGAAGTGCCTCAAGCCAATATACAAGCAGCAGTATGTCTAGCAGCAGCAGAGGAAGTGGCAGTGTTCGCTCGGATGTTAACGGTAGCAGAAGGACAGAAGAGAGCATGCGTTTAGCCATGGAATCTGGCGATGAGGGAACCAATCCTCCTTTCGATCGTATGAGTAGCAGTGATTCAGAAAGGCGATGA 1779 0.4334 MNCFPCCGPQKNKQSNSKREHGTTTTQEVTSASKAPDMKKQRGDEQMQGDATNINAQNFTFRELATATKNFRQECLLGEGGFGRVYKGVIPATGQAVAVKQLDRHGTENSKDFLSEVALLSHVHHENLVSLIGYCADGEQRLLVYEYYPAYTLEDRLLGNRPDEPPLNWFERMRVAAGASKGLEYLHDNANPPVIFRDLKTFNILLGTENDLNAKLYDFGLAKLCGGDKMNNAPPRVMGTYGYCAPEYTRTGQVSLKSDVYSFGVVLLELITGRRAVDTTKPNEEQNLVSWAQPLFRDPKKYPDMADPLLNKHFPEKDLNQAVAIAAMCLQEEPEARPLIGDVVTALSFLSTAPTEPIPPPSLPTATSRHSTATESEYDSESESEGETSDDEDTDYEEDNETAQNHVAAGEKSQKRATSKKSSRKSSTKSRNETTSKDSAEGSASSSGKTSRKWQSFVGNLSQKSNSSSKKSSIKEISQKSSKKTSIKELCQKSSRKSSNKDLSHKSSRKSSAKVSSRMESEDGSMNSFHRSASSQYTSSSMSSSSRGSGSVRSDVNGSRRTEESMRLAMESGDEGTNPPFDRMSSSDSERR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05925 592 FunFam Serine/threonine-protein kinase PBS1 148 361 - -
Vivi1g05925 592 MobiDBLite consensus disorder prediction 518 556 - -
Vivi1g05925 592 MobiDBLite consensus disorder prediction 476 517 - -
Vivi1g05925 592 Pfam Protein kinase domain 73 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05925 592 MobiDBLite consensus disorder prediction 10 50 - -
Vivi1g05925 592 ProSiteProfiles Protein kinase domain profile. 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05925 592 Gene3D Transferase(Phosphotransferase) domain 1 150 356 - -
Vivi1g05925 592 Gene3D Phosphorylase Kinase; domain 1 41 147 - -
Vivi1g05925 592 SUPERFAMILY Protein kinase-like (PK-like) 57 377 IPR011009 -
Vivi1g05925 592 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vivi1g05925 592 SMART serkin_6 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05925 592 MobiDBLite consensus disorder prediction 353 592 - -
Vivi1g05925 592 MobiDBLite consensus disorder prediction 378 399 - -
Vivi1g05925 592 MobiDBLite consensus disorder prediction 10 34 - -
Vivi1g05925 592 FunFam probable serine/threonine-protein kinase RLCKVII 43 147 - -
Vivi1g05925 592 PANTHER OS07G0668900 PROTEIN 3 356 - -
Vivi1g05925 592 MobiDBLite consensus disorder prediction 437 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05925 Vivi-Chr1 130793136 130796245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05925 1 436 Glycoside Hydrolase AT3G07070 52.691 5.67e-154 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi1g05925 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05925 - - gmx:100804526 573.163