Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05924 ATGCCAAACAACGAAGACCAGACGTTTGCATTGAAGGACAAGTTACGAGAACTTGTTCATACTATCGTTGAAGGCGATGATTTCAATCTGCATGCTGCTGATGAAGCCATCACTGCACTTTCTGTTCTCAGGGACTTGAAATCCAGTGCTTCTTTTTCGAGTAAATTCGATCGGTTATCTGTTCCTGTTCCTTCGCAGTTTCGATGCCCCATCTCAGGTCTCATCATGACTGATCCTGTTATCTTGGCCAATGGACAGACTTATGATCGACCGTTCATTCAGAAATGGCTGAATGAAGTTCATAGAGATTGCCCTCAAACACAGCATGTCCTCTCTCACTCCATCCTTTCTCCTAATTATTTGGTCCAAGACATGATTTCAAGGTGGTGTAAGGAGCATGGAGTTGAGCTACCAATGCCTGTTGGGGATATTGTCAGTGGAGAACCAACCGAAGCGCATAAGTATCGTTTACGGTCATTGCTTCACAAACTGTCATTATCTGTGTTGGATCAAAGAGAAGCTGCAAGAGAGCTTAGGCTTTTAGCGAAGCAAATGCCTCCGTTTCGAACATTCTTTGGTGACTCCGAAGTGATTAAAAAATTGCTTAGTCCGTTATCACAAGGCGTGGCTTGTATAGACCCGGAACTCCATGAAGACTTGATCACGGCTGTTCTGAATCTGTCGATCGACGATAACAATAAGAGAGTTTTTGTAGAGGATGAAAAGCTTATCACCTTTATTATCGATTCGTTGAAATCAGGAACTGTTCAAACAAGAAGCAATGCTGCAGCAGCAATTTTTTCATTATCAGCACTTGATATCAACAAACAAATCATTGGAAAAACCGGTGCGATTAAATACTTGGTTGATCTTTTAGAAAAGGGACATCCATCATCAATGAAAGACGCTGCTTCGGCTCTATTCAATCTATGTATTGCACATGAAAATAAAGCGAGAACAGTTCGAGAAGGTGTGGTTCAGGTTATTCTCAGCAAGATCATCGTGGACCGTGTTCTAGTAGACGAGTTTTTGGCCTTATTGGCACTTCTCTCTAGCCATTCTAAGGCTGTTGCGGCATTGGGAAGTCATGGCGCTGTCCCTTTCTTTATGGATATATTAAGAGATAGCAGCATTTCGGATCGCAGTAAGGAGAACTGTGTTGCAATCTTGTACATAATATTTTTCAATGATAAAACAAAGAGGAAAGAAATTAGAGATGATGAAGTATCCAATGGTACATTGGCTAAGCTTGCAGAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGTGGTATTCTTGATAGGCTCAAGATTTCTCAATCCTCAAGATAA 1332 0.4144 MPNNEDQTFALKDKLRELVHTIVEGDDFNLHAADEAITALSVLRDLKSSASFSSKFDRLSVPVPSQFRCPISGLIMTDPVILANGQTYDRPFIQKWLNEVHRDCPQTQHVLSHSILSPNYLVQDMISRWCKEHGVELPMPVGDIVSGEPTEAHKYRLRSLLHKLSLSVLDQREAARELRLLAKQMPPFRTFFGDSEVIKKLLSPLSQGVACIDPELHEDLITAVLNLSIDDNNKRVFVEDEKLITFIIDSLKSGTVQTRSNAAAAIFSLSALDINKQIIGKTGAIKYLVDLLEKGHPSSMKDAASALFNLCIAHENKARTVREGVVQVILSKIIVDRVLVDEFLALLALLSSHSKAVAALGSHGAVPFFMDILRDSSISDRSKENCVAILYIIFFNDKTKRKEIRDDEVSNGTLAKLAECGTSRAKRKACGILDRLKISQSSR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05924 443 CDD RING-Ubox_PUB 64 116 IPR045210 -
Vivi1g05924 443 SMART arm_5 353 395 IPR000225 GO:0005515
Vivi1g05924 443 SMART arm_5 272 312 IPR000225 GO:0005515
Vivi1g05924 443 PANTHER U BOX DOMAIN-CONTAINING 10 435 - -
Vivi1g05924 443 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Vivi1g05924 443 Gene3D - 157 442 IPR011989 -
Vivi1g05924 443 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Vivi1g05924 443 SUPERFAMILY RING/U-box 51 137 - -
Vivi1g05924 443 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Vivi1g05924 443 Pfam Armadillo/beta-catenin-like repeat 275 311 IPR000225 GO:0005515
Vivi1g05924 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Vivi1g05924 443 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Vivi1g05924 443 SUPERFAMILY ARM repeat 168 436 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05924 Vivi-Chr1 130790924 130793135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05924 125 437 U-box Gene Family AT3G07360 50.157 1.69e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05924 - - gmx:100806132 524.242