Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05906 ATGAAAACAATGGCTTCACCTTCTCTTCAGTTTCATCTTGTTCCCTCTCTCTCCAAATCCTGGTCTTCAATATCCCCTCTTTCCCAACATCACACCCATCCATTCACTTCCACAACCTCACTCAAATTCATTTCTACCAATTCCATTACCACTTTTACTCCCAAACCTCTCTCTCCCTGTTCCGCTCTAACAGAGTCCAACTCTCCTAATTCCACCCAACCTGACCCCAAAACTCTTCTCCAAGACATTGCCGACAGTTTTGATCTTCCTTCTGATTACTTTGCGAAGTTCCCCAACGATCTTCGATTAGATCTAAATGATGCTGCGTTCGACCTTTCAAATGGACCTGTCTTGGATGAGTGTGGCAAAGAGTTAGGAGAGACATTGCTAAACCTCTCTCGAGCATGGGAGCTTGCTGATACATCATCCTCTCGCTCTTTAGTCGCAAAGCTTCCTTTGATTGAGGCTACTTTGTCAGGCACTGCCAAATCAGCACTTGGAAAACGTTTGGTATCTGCTGGAAGAAGGTTTCAGTCAATGGGGCAATATGGCCAAGGTGAGACACAAAAGATTGCAAAGGCAATGATTGAGGCTGGGAGAGCTTTGTCTTCTAATTCAACATCTGCAGTTGTTGATAAGCAGCCCAAAGAGGAAAGTAGGACGCTGAAGTTTGGAGCATTGCAGGTTGAAATTACTCCCCTTAAAGCCAATATAGGGGCTGCAATTGCATTAGTTTTTGGGATTCTTACATGGGAGATAGCTCAGGGAGTTCAAAGCAGTCCAGAGAGTTCTTTGCAGTATGCAAATGACAATGCCTTAATGCTTGCTAAGTCTTTGAGGGGAACATTGCTTGCTCTTTTTTACGCTTCCACACTCTTGTCTGCACTTACTTCAGCAGGGCTTGTTTTACTTGGTATACAACTTAAATCAGATATGGCTTCCCTCTCTTGCTCAGCCAACGACCTTGCCCCACTTCTCACCACCACCGCAAACGCAACCGCCGTCGCAAACTACCTCTGCACCCAATTCAATGCAATCTCAAAAAAACTCAGCGACACAACCTACGCAGTAGATAACACCTACCTTCTCTTCTCAGCTTATTTAGTCTTCGCCATGCAGCTCGGTTTCGCCATGCTCTGCGCCGGTTCCGTTCGAGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCTGCAGGCGGCCTCTCCTATTACCTATTCGGTTTTGCTTTTGCCTTCGGAGCACCTTCCAACGGCTTCATCGGCCGCCACTTTTTCGGTCTAAGTGATTACCCTTCACCTCAAGGTGACTACAGTTTCTTCCTCTACCAATGGGCTTTCGCCATTGCCGCCGCGGGAATCACCAGTGGTTCCATTGCAGAGAGAACACAGTTTGTTGCGTATCTTATATACTCTTCTTTCTTAACCGGTTTTGTATATCCCATTGTTTCGCATTGGGTTTGGTCTTCTGGTGGTTGGGCCAGCCCAACCCGAACCAATGGCGATGTTTTATTCGGGTCCGGCGTCATCGACTTCGCCGGTTCCGGCGTGGTTCATATGGTTGGTGGTATAGCAGGGTTATGGGGAGCATTTATAGAAGGTCCGAGAATCGGCCGGTTCGACCGGACCGGTCGTTCTGTTGCTTTAAAAGGACACAGCGCGTCTTTAGTAGTGTTAGGTTCGTTTTTGTTATGGTTCGGTTGGTACGGGTTCAATCCCGGTTCGTTTTTGACAATCGTAAAAAACTACGGAAATACCAACGGAAGGGATTACTATGGTCAATGGAGTGCTATTGGAAGAACAGGTGTCACAACGACATTGGCTGGATGCACTGCGGCTTTAACGACTCTGTTTAGTAAACGGTTATTAGACGGACACTGGAATGTGATAGACGTGTGTAACGGTTTACTCGGCGGTTTCGCCGCGATAACTTCGGGTTGTTCGGTTGTTGAGCCGTGGGCGGCGATTGTGTGTGGGTTTGTTGCGGCGTGGGTTTTGATTGGGCTTAATAGATTGGCGGTTAAGGTGAAGTATGATGATCCTTTGGAGGCGGCGCAGTTGCACGGAGGGTGTGGCGCGTGGGGAGTGTTGTTTACGGGGTTGTTTGCGAAGGGGGAGTATGTTGACGAGATTTATGGGGTTGGGAGGCCGTTTGGATTGTTGATGGGTGGTGGAGGGGGATTGTTTGCGGCACAGGTGGTTGAGGTGGTGGTGGTGTGTGGGTGGGTTACTGTGACGATGGCGCCGTTGTTTTATGGATTGAATAAGATGAAGTTGTTGAGGGTGTCGAGAGATGAAGAGAGTAAGGGGATGGATTTGAGTAGACATGGTGGGTTTGCTTATGCGTATCATGATGAAGGTGATGATGAGTCGGTTAGAAAATTAGGGTCTATGATGGGTAGGATTGAGCCTGCCGGAGGTGTTTCTCCCTCCGCCGGCGGGAACGATTCACTGATGCCAAACACTGCACCACCAGTGTGA 2490 0.4831 MKTMASPSLQFHLVPSLSKSWSSISPLSQHHTHPFTSTTSLKFISTNSITTFTPKPLSPCSALTESNSPNSTQPDPKTLLQDIADSFDLPSDYFAKFPNDLRLDLNDAAFDLSNGPVLDECGKELGETLLNLSRAWELADTSSSRSLVAKLPLIEATLSGTAKSALGKRLVSAGRRFQSMGQYGQGETQKIAKAMIEAGRALSSNSTSAVVDKQPKEESRTLKFGALQVEITPLKANIGAAIALVFGILTWEIAQGVQSSPESSLQYANDNALMLAKSLRGTLLALFYASTLLSALTSAGLVLLGIQLKSDMASLSCSANDLAPLLTTTANATAVANYLCTQFNAISKKLSDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLSDYPSPQGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWVWSSGGWASPTRTNGDVLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRTGRSVALKGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKNYGNTNGRDYYGQWSAIGRTGVTTTLAGCTAALTTLFSKRLLDGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIVCGFVAAWVLIGLNRLAVKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKGEYVDEIYGVGRPFGLLMGGGGGLFAAQVVEVVVVCGWVTVTMAPLFYGLNKMKLLRVSRDEESKGMDLSRHGGFAYAYHDEGDDESVRKLGSMMGRIEPAGGVSPSAGGNDSLMPNTAPPV 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05906 829 Gene3D Ammonium transporter AmtB like domains 335 801 IPR029020 -
Vivi1g05906 829 SUPERFAMILY Ammonium transporter 355 765 - -
Vivi1g05906 829 PANTHER AMMONIUM TRANSPORTER 329 780 - -
Vivi1g05906 829 Pfam Ammonium Transporter Family 361 784 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vivi1g05906 829 ProSitePatterns Ammonium transporters signature. 514 539 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vivi1g05906 829 NCBIfam ammonium transporter 358 784 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi1g05906 829 FunFam Ammonium transporter 339 799 - -
Vivi1g05906 829 Pfam Protein of unknown function (DUF3082) 232 308 IPR021434 -
Vivi1g05906 829 MobiDBLite consensus disorder prediction 807 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05906 Vivi-Chr1 130513149 130524997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05906 311 807 Inorganic Solute Cotransporters AT1G64780 77.535 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05906 K03320 K07573 zju:107412282 1119.76