Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05905 ATGGAATTTGGTTGCACACACTTTATCATTAACCTCTGTCATGTGTGTTTTAAGCCAAACTTCAATTCAATTTATACAGAAATGGGTTATCACAGTGAGAAAGAATGGTACTTTTTCTCTCAGGGGGATCGAAAATACTCGAACAGTTCCTGGCCTAACCGGGTTGCCGGAAGTGGTTACTGGAAGGCTACCGGAGCTGATAAACCAACTGGGAAAGTGAAACCAATGGGGATACAAAAAGCACTGGTTTTCTATGCCGGTAAAGCCCCCAAAGGAGTGAAAACTAATTGGATTATGCATGAATATCGTCTTGCCAACGTTGATAGGCCCGCCAGCAAGAAAAATAATTTAAGGGGAACTCTTGTCCATCAAGAAAATGCTGAACTCCATAAAAAAATGGACTTCATTCAGAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCGAATCTTTCATGCACTATCAATGGATATGATTTACATGCGCCGATCAGTCTTCAGCTAAGGCAACCACAGGCTCAATACAGTGAACCCGCAACCATGAAATTATGGTATTCCCTCGAACTAATAATATATCGCATATAG 618 0.4061 MEFGCTHFIINLCHVCFKPNFNSIYTEMGYHSEKEWYFFSQGDRKYSNSSWPNRVAGSGYWKATGADKPTGKVKPMGIQKALVFYAGKAPKGVKTNWIMHEYRLANVDRPASKKNNLRGTLVHQENAELHKKMDFIQKENAELQKKVYEARSTNEENVASNLSCTINGYDLHAPISLQLRQPQAQYSEPATMKLWYSLELIIYRI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05905 205 Gene3D NAC domain 6 140 IPR036093 GO:0003677|GO:0006355
Vivi1g05905 205 ProSiteProfiles NAC domain profile. 1 125 IPR003441 GO:0003677|GO:0006355
Vivi1g05905 205 SUPERFAMILY NAC domain 30 106 IPR036093 GO:0003677|GO:0006355
Vivi1g05905 205 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 124 - -
Vivi1g05905 205 Pfam No apical meristem (NAM) protein 29 104 IPR003441 GO:0003677|GO:0006355
Vivi1g05905 205 Coils Coil 126 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05905 Vivi-Chr1 130508618 130509786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05905 27 167 NAC Transcription Factor Family AT5G63790 56.757 1.41e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g05905 NAM 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05905 - - vvo:131654095 432.565