Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05902 ATGGAACCCAACAACGTCAACAACACCAACCTACTCACCTCACTCTTCGAGCACCAAGCCGTTAGCCCCGTCACCGTCAACGCTTCTCCAGTTAACGGTTCGTTAGTAACAACCACAACCACCGATGGGTCCCACTCCAACCTTCATTCCGTTACGGAGAACAAGAAGAAGCGAGGTAGGCCTAGGAAGTACGAGTCTCCACAAGAAGGCCTCGCCGCTAGGAAAGCTGCCGCTGCGGCGGCGGCGGCGGCCGCCGCTGCTTCCCCTGCTCCTGCGACGTCGTTTACCTCTTTGAATCTCAACAAGCAGAAAAAGTTTCATTCCTCTTCTCTAGGTAATTTGAGAGAGAACTTCAATCTTCACATTGTTGCTGTTCCTGCTGGTGAGGATATTGGCCAAAATATTATGTCGCTCATGCAAAAACATAATAGGTGTGAGATGTGCATTTTGTCTGCATCTGGTTCCGTCTCTAGTGCTACTCTTCGTCAGCCGGCAACCGCTGGAGGCAATATTACGTATGAGGGTCGCTTTGACATTATTTCCCTGACTGGATCATATGTCCGTAATGAACACGAAGGCCGTTCTGGCGGTCTCAGTGTATGCTTAGCTCATTCTGATGGGCAACTTGTAGGTGGAAGCATTGCCGGACCCCTCAAAGCCGCCAGTCAAGTTCAGGTCATCGCCGGCACATTTTCTATTGAACCCAAGGACACTGGTGCTGGTATAAAAGGCAATACTTCTACCAGCAAGTTACCATCACCGGTAGGTGAGCCTGCATCAAATTTAAGTTTCCGCCCAGCACTTAACTCTTCAAATGGGAATACAATCCCGGGAAACAAAGAGCATCAAGCTATTGGGGGAAGTCATTTCATGTCTCCACAATATGGAGTAAACGTGGTTCCTTTCCATCCCTCGGATTGGGGAAGTCGTCCAGATTCTAGGAATGCTGGTTTTGAACTGATAGGAAGAACAGGTCATGAAGCTCACCAGTCTCCTGAGAATGGGGCCTATTCCTGA 1017 0.4946 MEPNNVNNTNLLTSLFEHQAVSPVTVNASPVNGSLVTTTTTDGSHSNLHSVTENKKKRGRPRKYESPQEGLAARKAAAAAAAAAAAASPAPATSFTSLNLNKQKKFHSSSLGNLRENFNLHIVAVPAGEDIGQNIMSLMQKHNRCEMCILSASGSVSSATLRQPATAGGNITYEGRFDIISLTGSYVRNEHEGRSGGLSVCLAHSDGQLVGGSIAGPLKAASQVQVIAGTFSIEPKDTGAGIKGNTSTSKLPSPVGEPASNLSFRPALNSSNGNTIPGNKEHQAIGGSHFMSPQYGVNVVPFHPSDWGSRPDSRNAGFELIGRTGHEAHQSPENGAYS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05902 338 MobiDBLite consensus disorder prediction 263 281 - -
Vivi1g05902 338 ProSiteProfiles PPC domain profile profile. 115 254 IPR005175 -
Vivi1g05902 338 MobiDBLite consensus disorder prediction 238 289 - -
Vivi1g05902 338 Gene3D - 119 243 - -
Vivi1g05902 338 MobiDBLite consensus disorder prediction 49 69 - -
Vivi1g05902 338 MobiDBLite consensus disorder prediction 35 71 - -
Vivi1g05902 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 231 - -
Vivi1g05902 338 CDD DUF296 119 231 IPR005175 -
Vivi1g05902 338 MobiDBLite consensus disorder prediction 241 256 - -
Vivi1g05902 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 270 IPR039605 GO:0003680
Vivi1g05902 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 231 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05902 Vivi-Chr1 130399842 130403789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05902 55 337 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 42.157 2.86e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05902 - - gmx:100809675 339.732