Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05901 ATGAAACCTTTTCTTTTCTTTCTCATCACATTCTCTTTCTTTTTCCAAACACAGTTACCACTAGTTTCTTCTGCTACAACTCTTCCCTTTCAACTCATCACTCTCCTCTCAATTAAATCAGCCCTCATTGACCCTCTCAATCATCTCAATGACTGGAAAATCAACCCTTCTAATTCTTCCACTACTTTCTCAAACTCCAATAACTCCCAGGACCCAATTTGGTGTTTTTGGAGAGGCATCACTTGTCACCCAAAAACAGCACAAATCACTTCCCTAAACCTCTCTCACCTCAATCTTACAGGCACTATCTCACCTCAAATCCGCTACTTAACCACCTTAACCCACTTGAACATAAGTGGAAATGATTTCAATGGAACTTTTCCAACAGCAATTTTCCAACTCACTGAGCTTAGATCACTAGACATTAGCCACAACTCCTTCGACTCAACTTTCCCACCTGGAATATCAAAGTTAAGATTCTTAAGAATCTTCAATGCTTACAGCAACAACTTCACAGGCCCTCTTCCTGAAGAACTAATCAGGCTTCCATTTCTAGAACAACTTAACCTTGGTGGAAGCTATTTCAGTGGCAGAATCCCACCAAGCTATGGAACTTTCAAAAGACTCAAATTCTTGTTATTTCATGGTAATGCATTGGAAGGTTCACTACCACCTGAATTAGGCTTATTATCAGAGCTACAACACTTGGAAATTGGATACAACCCATTCTCAGGAACAATACCAGTGGAATTAACAATGTTGTCTAATCTCAAATACTTAGACATCTCATCCACAAACATCTCAGGTCAAGTGATTCCAGAACTAGGAAACTTAACCATGCTTGAAAATTTGTTTCTCTTTGCGAATCGGTTAAGCGGAGAAATCCCATCAACCATAGGCAAGTTGAAATCACTAAAAGATCTTGATTTATCCGTCAATGAACTCACAGGTTCAATTCCACCAGAAATAACAATGTTGAAGGAACTAACAAGGCTGAATCTTATGATTAACAAGCTAAGAGGTGAAATTCCACAAGGAATTGGCGAGCTTCCACAACTTAACAGGTTCTATGTTTTCAACAACTCACTCAATGGTACACTACCACCAAAGCTCGGTTCCAACGGGCTACTACAATTACTAGATGTCTCCACAAACTCACTCCAAGGTCCAATCCCTATCAACGTTTGCAAAGGAAACAATCTTGTTAAGTTCAATCTCTTTGATAACAAATTCACCAATAGTCTTCCACCATCACTCACTAGCTGCACCTCACTTGCTCGGGTTCGGATACAAAACAACAAACTCACAGGTTCAATTCCTCAAACACTTACAATGCTTCCTAATTTGACATACCTTGATTTGAGCAACAACAATTTCTACGGGGAAATTCCTACAGAATTAGGCAACCTTCAATACCTAAACATCACAGGAAACTCGTTTGAAAGCAATTTACCTAGCAACATTTGGAACGCAAGCAATCTACAGATTTTCTCAGCTTCTTATTCAAAAATCACCGGTCAAATTCCCGAATTCGTCGGATGCGAATCGATTTACAAGATTGAATTGCAAGGGAATTTATTCAACGGTAGCATTCCTTGGAATATCGGTCATTGCGAGAAACTGATTATGTTGAACCTAAGTAGAAACAATCTCACCGGAATCATACCTTGGGAAATCTCAACTCTTCCTTCAATCACCGACGTTGATCTCTCACAAAACTCACTCACCGGAACAATACCTTCAAGCTTCAACAACTGCTCCACTCTCCAGAATTTCAACGTCAGCTTCAACTCCCTCACCGGTCCAATTCCTTCCTCCAGCATCTTCCAAAGTCTCCATCCCTCTTCCTACTCCGGCAACAAAAACCTCTGCGGTGATCTCTTAGCCAAACCCTGTGCCTCTACCGGAGAAAACGAACTCGAGGTCCACCGCCAGGAACCGAAGAAAACCGCCGGCGCAATCATTTGGATAATCGCGGCGGCGTTCGGGATCGGAATCTTCGTTATCGTCGCCGGAACACGTTGCTTCCACGCGAATTATAACAGTGGTTTCAACGAGAGTAACGGCGAAATCGGACCGTGGAAGTTAACGGCGTTTCAGCGGTTAAACTTCACGGCGGAGGATGTACTCGAGTGCGTCTCAATGTCTGATAAGATATTAGGAATGGGGTCCACGGGAACGGTTTATAAAGCAGAAATGCCAGGTGGAGAAATCATAGCCGTCAAAAAGCTATGGGGAAAACAAAAGGAAAATAACAGTAATCTAATCCGACGGAGGAGAGGCGTTTTAGCTGAAGTGGACGTATTAGGAAACGTGAGACACAGGAATATTGTGAGATTGTTAGGGTGTTGCAGCAATCAGGAAATTACCATGTTGCTCTACGAGTACATGCCAAATGGTAACCTTGATGATTTGTTGCATGGTGAGAATAAAGGGGACAATATGGTAATTTCGGATTGGTTTACCAGGTACAAGATAGCATTAGGTGTGGCTCAGGGAATTTGTTATCTACACCATGATTGTGATCCTGTGATTGTGCATAGAGATCTTAAACCTAGTAACATTTTATTGGACGGTGAGATGGAAGCTAGAGTGGCTGATTTTGGTGTGGCTAAGTTGATTCAAGCTGATGAATCTATGTCTGTTATTGCTGGATCATATGGTTACATTGCTCCAGAGTATGCTTATACACTCCAAGTTGATGAGAAGAGTGACATTTACAGCTATGGAGTGGTGTTGATGGAAATTTTAAGTGGAAAACGTTCGGTGGATCAAGAGTTTGGTGATGGGAATAGTATTGTGGATTGGGTTAAGTCGAAAATAAAGACGAAAGATGGAGTTGAGGGTATATTGGACAAGAATGCAGGGCCAGGGTGTGGTTCAGTGAAAGAAGAAATGATACAAATGCTTAGAATTGCATTGCTTTGTACAAGCAGAAATCCAGCTGATAGGCCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGCGGCTAAACCTAAGAGAAAATTGCTTGGTGGAGGGGGTGATGTTGCATTGATTCAAAAGCCAGTTACCAATGAAAGCTAG 3066 0.4165 MKPFLFFLITFSFFFQTQLPLVSSATTLPFQLITLLSIKSALIDPLNHLNDWKINPSNSSTTFSNSNNSQDPIWCFWRGITCHPKTAQITSLNLSHLNLTGTISPQIRYLTTLTHLNISGNDFNGTFPTAIFQLTELRSLDISHNSFDSTFPPGISKLRFLRIFNAYSNNFTGPLPEELIRLPFLEQLNLGGSYFSGRIPPSYGTFKRLKFLLFHGNALEGSLPPELGLLSELQHLEIGYNPFSGTIPVELTMLSNLKYLDISSTNISGQVIPELGNLTMLENLFLFANRLSGEIPSTIGKLKSLKDLDLSVNELTGSIPPEITMLKELTRLNLMINKLRGEIPQGIGELPQLNRFYVFNNSLNGTLPPKLGSNGLLQLLDVSTNSLQGPIPINVCKGNNLVKFNLFDNKFTNSLPPSLTSCTSLARVRIQNNKLTGSIPQTLTMLPNLTYLDLSNNNFYGEIPTELGNLQYLNITGNSFESNLPSNIWNASNLQIFSASYSKITGQIPEFVGCESIYKIELQGNLFNGSIPWNIGHCEKLIMLNLSRNNLTGIIPWEISTLPSITDVDLSQNSLTGTIPSSFNNCSTLQNFNVSFNSLTGPIPSSSIFQSLHPSSYSGNKNLCGDLLAKPCASTGENELEVHRQEPKKTAGAIIWIIAAAFGIGIFVIVAGTRCFHANYNSGFNESNGEIGPWKLTAFQRLNFTAEDVLECVSMSDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKQKENNSNLIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNQEITMLLYEYMPNGNLDDLLHGENKGDNMVISDWFTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQADESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDQEFGDGNSIVDWVKSKIKTKDGVEGILDKNAGPGCGSVKEEMIQMLRIALLCTSRNPADRPSMRDVVLMLQAAKPKRKLLGGGGDVALIQKPVTNES 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05901 1021 SUPERFAMILY Protein kinase-like (PK-like) 717 994 IPR011009 -
Vivi1g05901 1021 SUPERFAMILY RNI-like 91 412 - -
Vivi1g05901 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Vivi1g05901 1021 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Vivi1g05901 1021 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 684 796 - -
Vivi1g05901 1021 Pfam Protein kinase domain 717 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05901 1021 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Vivi1g05901 1021 FunFam leucine-rich repeat receptor-like protein kinase TDR 797 1005 - -
Vivi1g05901 1021 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 209 996 - -
Vivi1g05901 1021 Pfam Leucine Rich Repeat 540 561 IPR001611 GO:0005515
Vivi1g05901 1021 SMART serkin_6 714 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05901 1021 Gene3D Ribonuclease Inhibitor 294 396 IPR032675 -
Vivi1g05901 1021 Gene3D Ribonuclease Inhibitor 193 293 IPR032675 -
Vivi1g05901 1021 SMART LRR_typ_2 302 326 IPR003591 -
Vivi1g05901 1021 SMART LRR_typ_2 562 585 IPR003591 -
Vivi1g05901 1021 SMART LRR_typ_2 446 470 IPR003591 -
Vivi1g05901 1021 SMART LRR_typ_2 134 158 IPR003591 -
Vivi1g05901 1021 SMART LRR_typ_2 350 374 IPR003591 -
Vivi1g05901 1021 Gene3D Phosphorylase Kinase; domain 1 691 796 - -
Vivi1g05901 1021 SUPERFAMILY L domain-like 317 624 - -
Vivi1g05901 1021 FunFam Leucine-rich repeat receptor-like protein kinase 31 201 - -
Vivi1g05901 1021 FunFam Leucine-rich repeat receptor-like protein kinase TDR 323 634 - -
Vivi1g05901 1021 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
Vivi1g05901 1021 Gene3D Transferase(Phosphotransferase) domain 1 797 1004 - -
Vivi1g05901 1021 Gene3D Ribonuclease Inhibitor 469 513 IPR032675 -
Vivi1g05901 1021 Gene3D Ribonuclease Inhibitor 397 468 IPR032675 -
Vivi1g05901 1021 Gene3D Ribonuclease Inhibitor 514 634 IPR032675 -
Vivi1g05901 1021 ProSiteProfiles Protein kinase domain profile. 714 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05901 1021 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 224 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05901 Vivi-Chr1 130360248 130364488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05901 4 1002 Receptor kinase-like Gene Family AT1G08590 43.038 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g05901 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05901 - - gmx:100809695 1545.41