Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05877 ATGGCGAACCGGTGGTGGACTGGACCGGTGGGTTTAGGTGGGATGGACAACTCAGTCAACTCATCACCACTAGTACCAAAACCGGATCTGGGTTTTTCCATGAACGAAAGTGCGGTAACAGGAGTAAACAACAACAATAACAACAATAACAACGAAGAAGACGAGAGAGAAAACAGTGATGAACAAAAAGGAGGAGCTATAGAAACAAGCAACTCCACGCGCCGTCCACGAGGCCGTCCATCAGGATCGAAAAACAAACCGAAGCCACCGATATTCATAACAAGAGACAGCCCTAACGCGCTGAGAAGTCATGTTATGGAAGTGGCATCAGGAACTGATATAGCAGATAGTGTTGTTCAGTTCGCTAGAAAACGGCAGAGAGGTATTTGCATTCTAAGCGCGAGTGGGACCGTTGTTAATGTTTCTCTCCGGCAGCCTACAGGTCCTGGAGCAGTGGTGGCGCTTCCGGGGAGATTTGATATTCTGTCGTTGACTGGTTCGGTGCTTCCTGGACCTTCACCGCCTGGTGCTACTGGTTTGACTATTTATCTTTCTGGAGGGCAGGGACAGGTGGTCGGTGGTGGAGTGGTTGGACCGCTGGTGGCGGCAGGGCCGGTTATGTTGATGGCTGCGACTTTTTCGAATGCAACTTATGAGAGGTTGCCTGTGGAGGATGGTGATGATCAGGAAGGACAGCAGGGTGGTGGTGGTGGTGGAGGAGGTGGTGATGAGTCTCCCCCGGCTGGGATGGGACAGTTGGCGGGTGGATCGGTCGGAGAAGGCTCGTCGTCGATTCCGGTTTATAACAATGTTGGTGGTGGTAATTTGGGTGTTTCAAATGGACAACAGTTGATGAATAATCATGAAGCTTATAATTCTCCTTGGGGTCATGGTGGTAGACCACCTTACTAA 912 0.5055 MANRWWTGPVGLGGMDNSVNSSPLVPKPDLGFSMNESAVTGVNNNNNNNNNEEDERENSDEQKGGAIETSNSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVASGTDIADSVVQFARKRQRGICILSASGTVVNVSLRQPTGPGAVVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGQQGGGGGGGGGDESPPAGMGQLAGGSVGEGSSSIPVYNNVGGGNLGVSNGQQLMNNHEAYNSPWGHGGRPPY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05877 303 Gene3D - 101 229 - -
Vivi1g05877 303 MobiDBLite consensus disorder prediction 223 261 - -
Vivi1g05877 303 PIRSF ESCAROLA 22 303 IPR014476 GO:0003680
Vivi1g05877 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 297 IPR014476 GO:0003680
Vivi1g05877 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 225 - -
Vivi1g05877 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Vivi1g05877 303 CDD DUF296 102 185 IPR005175 -
Vivi1g05877 303 MobiDBLite consensus disorder prediction 1 98 - -
Vivi1g05877 303 MobiDBLite consensus disorder prediction 64 78 - -
Vivi1g05877 303 ProSiteProfiles PPC domain profile profile. 98 233 IPR005175 -
Vivi1g05877 303 FunFam AT-hook motif nuclear-localized protein 101 229 - -
Vivi1g05877 303 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05877 Vivi-Chr1 129740619 129742173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05877 1 303 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 52.866 2.41e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05877 - - tpra:123903180 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05877 1 129740619 129742173 Vivi1g05877 1 129740619 129742173 ECH