Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05868 ATGTGCGAAACCCTAAAAACCAACTACCAACTCAGCGACGAGATCGGACGTGGGCGTTTCGGCACCATCTACCGGTGCTTCCACCCTAGCTCCGCCGTGCCTCACGCCTGCAAAGTCATCGACAAATCTCTCCTCTCCGATTCCACCGATCGTGAGTGTCTCCAGAACGAACCGAAATTCCTCTCTCTCCTCTCGCCTCACCCTAACATCCTTCAAATCTTCGACGTTTTCGAAAACGACGAGTTCTTATCCATCGTGTTAGAGCTTTGTCAGCCTCTCACTCTCCTCGATCGCATCGTTTCGAATCCTGTCACCGAACAACAAGCGGCGTCTCTCATCAAAAAGCTTCTTGAGGCCGTTGTTCACTGCCACCGTCTCGGTGTCGCGCACCGTGACATCAAGCCGGATAACATTCTCTTTGATTCTAACGATAATCTGAAATTAGCCGATTTCGGTTCGGCGGAATGGTTCGGCGACGGCAGAACCATGAGCGGTGTTGTTGGAACGCCGTATTACGTGGCGCCGGAGGTTCTTTTGGGAAGAGATTACACAGAGAAAGTTGATGTGTGGAGTGTTGGTGTGATACTGTACATAATGTTGAGCGGGATTCCTCCTTTTTACGGAGATTCCGCCACCGAAATTTTTGAAGCGGTTATTAGGGCGAATCTGAGGTTTCCGTCTAGAATCTTCCGTTCCGTTTCATCATCTGCCAAGGATCTGTTGAGAAAAATGATTTGCAGAGATGCTTCCAGAAGATTTTCTGCAGAACAAGCATTGAGACACCCTTGGATAGTGAGTGGAGGAGAAACAACTGATCAGAACTGA 825 0.4921 MCETLKTNYQLSDEIGRGRFGTIYRCFHPSSAVPHACKVIDKSLLSDSTDRECLQNEPKFLSLLSPHPNILQIFDVFENDEFLSIVLELCQPLTLLDRIVSNPVTEQQAASLIKKLLEAVVHCHRLGVAHRDIKPDNILFDSNDNLKLADFGSAEWFGDGRTMSGVVGTPYYVAPEVLLGRDYTEKVDVWSVGVILYIMLSGIPPFYGDSATEIFEAVIRANLRFPSRIFRSVSSSAKDLLRKMICRDASRRFSAEQALRHPWIVSGGETTDQN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05868 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vivi1g05868 274 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Vivi1g05868 274 Gene3D Transferase(Phosphotransferase) domain 1 94 274 - -
Vivi1g05868 274 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Vivi1g05868 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05868 274 CDD STKc_CAMK 8 263 - -
Vivi1g05868 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 268 - -
Vivi1g05868 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Vivi1g05868 274 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 274 - -
Vivi1g05868 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05868 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05868 Vivi-Chr1 129584940 129586195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05868 3 273 EF-hand Containing Proteins AT1G50700 41.455 3.49e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi1g05868 Pkinase 1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05868 - K08794 gmx:548089 471.855