Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05857 ATGACGACACCATCTTCTTCCTCATCCTCTCAACCTCCATACGCATATTCCAACGCTCCTTACTTTCCCGTTCCCTTTCACCTTCAACAACCCGCAACCACCACTCACTACGCCGCACCGTACGTTGCCGCCCCTACCGTGCAGCTTCCTCCGCCACCAGTAGTTGGTCCCGTTCCCCCTCCGTCTGCTTACTCCGTGCCGCAGTATCAGGCACAGCAGTTATTTGAGAGGGATGCGCAAATAATTACGCCGGAGGCTCTTGAGAATGTGAAGGCAGCGATTGCGAGTAGCGATGTTGAGCATAAAGCTGAGACGAAAAAGAAAGCTGTTCCTAGGAAAGCTGCTGGACAAGCTTGGGAGGATCCTATACTTGCAGAGTGGCCTGAAGATGATTACCGACTCTTCTGTGGTGATCTTGGTAATGAAGTCAATGACGATGTTCTTTCGAAGGCATTCACAAGATTCCCTTCCTTTAACATGGCAAGAGTTGTTAGAGATAAGCGAACTGGAAAAACAAAGGGCTATGGGTTTATAAGCTTTGCCAACCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTCGGAAACCGGCCAATAAAACTACGCAAGAGTAAGTGGAGGGAGAGAACTGATTATGATGCACTGGAGAAACAGAAGAACCATATTCAGAAGAAACCAAAAATGTCAAGGAAGAGTATCCTTCACAAGTGA 723 0.4758 MTTPSSSSSSQPPYAYSNAPYFPVPFHLQQPATTTHYAAPYVAAPTVQLPPPPVVGPVPPPSAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQAWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDYDALEKQKNHIQKKPKMSRKSILHK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05857 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Vivi1g05857 240 FunFam RNA-binding protein 42 67 217 - -
Vivi1g05857 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Vivi1g05857 240 CDD RRM_RBM42 126 208 IPR034215 -
Vivi1g05857 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Vivi1g05857 240 MobiDBLite consensus disorder prediction 220 240 - -
Vivi1g05857 240 SUPERFAMILY RNA-binding domain, RBD 116 212 IPR035979 GO:0003676
Vivi1g05857 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 62 218 - -
Vivi1g05857 240 Gene3D - 71 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05857 Vivi-Chr1 129225043 129228180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05857 81 212 Eukaryotic Initiation Factors Gene Family AT1G71770 24.088 1.00e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05857 K25079 - gmx:100791946 382.489