Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05849 ATGTCGTCGTCTTATCCGTCGTCCTCGATGCGAGCGACGTCGATTAATTCCAACAACAGGACTGCCGGACACATGTTTTCGAACCCTGCTGAGCTACTTGATAACATCTCGTTTTCGCCTGCTTCGGAAATGCATTCTATGCCGTTTCCTCAAGAAAGTGATGCTGTTTCCTGGGGGACGGAGCTGTTTGACGATATGCTTCCGTTTTCGGATAATGTTCCCATCCAGAATGATCATGTGGGATACAGTGGTGGTTCGGATGTCTTGGGTGGGAATGCTAAACCGACGGAGTTTAAGGAGTGGGTTGATCAGTTGATGTCGGTTGATGATGATGATTCTCTTAATCCTAATTGGAATGAACTTCTCGGTGATAATAATATGGCAGAACCATTAGCAAAGGAGAATCAATTTTCACTGCAGGAGGCTCAAGTTTCGCTGCAGCAGTATGTAACATCTAATGAAGTTTCACTGCAGGAGAATCAAGTTTTACCGCAGGAGAATCAAGTTTCACTGCAGCAGTATCTTCCTAATTCTTCTGGATCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCCGAACTTCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACGCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATTTATCATGTGAAAAGCCACCTGCAGAAATATAGAACTGCCAGATACAAACCGGAAGCATCAGAAGGAATTCCAGAGAAGTTGACTTCGATTGAAGAAATGCCGCCTATAGACTTAAAAACGCCTAAGGGCATTACCGAAGCATTGCGGTTACAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATCTACAGATTCAAATTGAGAACCAAGGCAAGCATCTACAGATGATGTTTGAGCAACAGCTCAAGTCGAGCGAGCCTTCTGCTCCGTCATCTAGCGCCGCACTACCTTCTCCAGTTGAAAATTTAGAAAACTCAAATGAGGGTCATGAAAAGATTGGAATCAACTGTAGCACTCCAGACACATGCGCGGAGCAAAAGGCAGATGATGCTAAAGTTACCGATGAACTTGACCAGTTATCCGCACCACCCACAAAACGAGCGAAGACTGACTAG 1158 0.4534 MSSSYPSSSMRATSINSNNRTAGHMFSNPAELLDNISFSPASEMHSMPFPQESDAVSWGTELFDDMLPFSDNVPIQNDHVGYSGGSDVLGGNAKPTEFKEWVDQLMSVDDDDSLNPNWNELLGDNNMAEPLAKENQFSLQEAQVSLQQYVTSNEVSLQENQVLPQENQVSLQQYLPNSSGSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEASEGIPEKLTSIEEMPPIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQLKSSEPSAPSSSAALPSPVENLENSNEGHEKIGINCSTPDTCAEQKADDAKVTDELDQLSAPPTKRAKTD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05849 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 164 341 IPR044848 GO:0003700
Vivi1g05849 385 Coils Coil 274 294 - -
Vivi1g05849 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 187 241 IPR006447 GO:0003677
Vivi1g05849 385 MobiDBLite consensus disorder prediction 315 357 - -
Vivi1g05849 385 SUPERFAMILY Homeodomain-like 185 241 IPR009057 -
Vivi1g05849 385 Pfam Myb-like DNA-binding domain 189 240 IPR001005 -
Vivi1g05849 385 MobiDBLite consensus disorder prediction 315 385 - -
Vivi1g05849 385 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g05849 385 Pfam MYB-CC type transfactor, LHEQLE motif 273 317 IPR025756 -
Vivi1g05849 385 Gene3D - 186 245 - -
Vivi1g05849 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 244 IPR017930 -
Vivi1g05849 385 FunFam Myb family transcription factor 186 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05849 Vivi-Chr1 128958649 128961719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05849 43 333 G2-like Transcription Factor Family AT3G04450 46.078 8.31e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g05849 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05849 - - psat:127093006 632.098