Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05840 ATGGAGGGAATAACTGAAGATGAAGTGATAGATGTTGATAGTGCTTCTGGTGGTTCTGTAAATGACGATTCAGACAACGAGGGATCTTTGCCTTCTGAAGTTGACGACGAACTGCATCTTGAGGAACCTCTAACTGAGGCGGAAATAGAAGACCTTATTTCTGAGCTTTTAGAAGTGGAGAGTAAGGCTGCGGAGGCCCAAGAAACTCTTGAAGAAGAATCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAACTCTGCAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGACGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAGCTCCCAAGCCTTTATAAGTTGATTGAAAGAGACGCTCCGAATGTTTGTCGCACTGAAGCATGGAAAAAGCGGAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTTCATCAGTTTCTGATGCTGAGAAATATCTACAAATAAACAGACCTGTTAGGAGGCGACATGGAAAATTATTGGAAGAGGGTGCTAGCGGTTTTCTTCAAAAAAAAATTTCTCCAGAAACCCAGGAACCTGGTAAAAAAGAAACCGAGGGGGACTGGGATGTGTTCAATAAAATAGTTTCTGATGGGAGTGGTATTGATACCTCATTCGGAAGTAAGACTTGGGCTTCTGTTTACTTGGCCAGTACTCCACAGCAAGCTGCCTTGATGGGACTCGAATTTCCTGGAGTTCATGAGGTGGAAGAAATTGATGATGTTGATGGCAATTCTACGGATCCATTTGTTGCAGCAGCCGTTGCAAATGAAAGAGAATTAGAACTTTCTGAACAGCAAAATCGACATTTTAAAAAGGTCAATGAAGAGGATGATGCAATTGTTGATAGGAGGCTTCAAATACGTTTGAAACATAGGAGGCATCAAAAGAAAAGTAAACTGCGAGAAACAAGCATACCTATCCAGCCCATGGAGAGCCATATACAAAAGCCTTCACCCGTCGATCAATTTAATCCTGATACAGAGGAAGGATCTCGAGTTGAAGGGGAAGTTGTGTATAACAATCATAAGGTTGAACATTTGAATATGGAGGCTGATCAAACTAAAGGTTTTGATGCCAGTTTTCGTCTTGACAATGAAACGCCTACGGGAGATGATAGTTTGTCTGATCCTCCCAAATCTTCACCGGGTGATGTTACTGAACAGAGAGGAACCAAGCGTCCAAATGATGGTGAGCTTGATGCTGATAACAAGAAGTACCGGACTGATATCGTCATCAGCGACGATGATATACCCGTTTCCAGTTCAGGCAGTAGTGATTCAGATAGTTCAGACGATTCAGACGATTCAGATTCAGATTCCGATTCCGATTCAGAGATAGCGCCGGTTACAATAAGTACTAAACGAAGACGCAAAAAAAAGATTAGGAGGATACTTGATGACACTGAATTAGGAGAAGAAACAAAAAAGAAAATAGCCATTGAAAAGGAACGTCAAGAACGCCTGAAATCTTTGAGAGTACAGTTTTCTGCTTCATCATTTGACAAAAGCTCGGCTGGCTGTAATGGTAGTTCATCTGAAGGTGCAAGCGTTGAAATTCTTGGCGATGCACTGGCAGGTTATATAGTCAATGTTGTGAGAGAAAAAGGTGAAGAAGCGGTTAGAATACCACCGAGCATTTCAGCTAAGCTGAAGACCCATCAGATTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTAGCTCATACCATGGGCCTTGGAAAAACGTTTCAGGTCATAGCTTTCTTGTATACGGCAATGAGAAGTGTCGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTACATAATTGGAGGATGGAGTTCATCAAATGGGCACCATCGGAATTAAAGCGACTCAAGGTGTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAATTGCTCGCAAAATGGAGAGCAAAAGGTGGTGTATTCTTAATTGGCTATACCGCTTTCCGGAATTTGTCTTTGGGAAAGAATGCGAAAGACCGGGAGTCAGCCAGAGAAATTTGTCATGCTTTGCAGGACGGCCCGGACATTCTTGTGTGTGACGAAGCCCATATCATAAAAAATACTAAAGCTGAAGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGAGAAGAATTGCACTTACAGGATCACCTCTTCAAAATAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGAAATCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACTCTGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTACGAAGAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAAGACCTACCACCTAAAACTGTTTTTGTGCTAACAGTCAAGCTTTCACCCTTACAAAGAAAATTGTACAAGAGATTCCTTGACGTGCATGGGTTCACTGATGTCAGGGAAAATCATGAAAAGTTAAGAAAGAGGAGCTTTTTTGCTGGGTACCAGGCATTGGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTGTGTAAGACCTGAAGATGCTGTCGAGAATTTCCTTGTTGATGATATCTCAAGTGATGAAAATTCCGATTCTAACGTGCTTGCTGGAGAGAAATTGAAGCATACAAATGATTTGCTGCAAAAGAAGGATGGTGATGGCTTCTTCGTAAAGGGCTGGTGGAAAGATATTCTTCATGGAAAAATTTATAAAGAACTTGATCAAAGTGGCAAAATGGTTTTGCTAATTGATATACTTACGATGAGTTCTGATGTGGGTGATAAGGTGCTGGTTTTTAGTCAGAGCATACCGACCCTAGACCTCATAGAACTTTATCTCTCAAGACTACCACGACGTGGCAAACGAGGGAAATTGTGGAAGAAGGGAAAAGATTGGTACAGGCTGGATGGAAGGACAGAGAGCTCAGAAAGACAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAGAAGGGTAAAATGCACACTAATTTCAACCAGGGCAGGCTCATTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATATATCGAGCTTGGAGGTATGGGCAGAAAAAGCCCGTGTTTGCTTATCGGTTGCTGGCGCATGGAACTATGGAAGAGAAAATATACAAGCGCCAGGTTACAAAAGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGACGAGAACCCCGAGACTTTGGCTGAACTAAGTAAATATGATGGGCTTACCTGTGAACAAAATAATCCAATTTTGGCTGGGGATTCACTGAAACATACCATACCACATTCAAATGGAAACGGTTACTCTGATAAGTTAATGGAAAGCTTACTGGGCAAGCATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAACTATCGAAAGAAGAGCAAGATATGGCTTGGGAGGTATATCGCAAATCGCTGGAGTGGGAAGAAGTTCAGAGAGTACCGGTTGGTGAGTCTGTGCCTGATCAAAAGGAAGAAGTGTCTAAGGAAGAAGAAGAACACAATGAATCAGAAGAATTCCCCCTTTCAACTAAGCTGAGAAATCGTTTCACAAAACGGCAATGCACCAATCTTGCGCACTTGCTGACACTTAGAAGTCAGGGAATAAGATTTGGGAGAAGTACAGTCTGCGGCGAATGTGCCCGGGAGATAAGGTGGGATGACTTAAAGAAGAAATAA 4053 0.4177 MEGITEDEVIDVDSASGGSVNDDSDNEGSLPSEVDDELHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELKQTLQGDDLETAVADEMATFKDEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIERDAPNVCRTEAWKKRNHWVGSQATTEIASSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETQEPGKKETEGDWDVFNKIVSDGSGIDTSFGSKTWASVYLASTPQQAALMGLEFPGVHEVEEIDDVDGNSTDPFVAAAVANERELELSEQQNRHFKKVNEEDDAIVDRRLQIRLKHRRHQKKSKLRETSIPIQPMESHIQKPSPVDQFNPDTEEGSRVEGEVVYNNHKVEHLNMEADQTKGFDASFRLDNETPTGDDSLSDPPKSSPGDVTEQRGTKRPNDGELDADNKKYRTDIVISDDDIPVSSSGSSDSDSSDDSDDSDSDSDSDSEIAPVTISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDKSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRMEFIKWAPSELKRLKVFMLEDVSRDRRAQLLAKWRAKGGVFLIGYTAFRNLSLGKNAKDRESAREICHALQDGPDILVCDEAHIIKNTKAEVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVLTVKLSPLQRKLYKRFLDVHGFTDVRENHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKDCVRPEDAVENFLVDDISSDENSDSNVLAGEKLKHTNDLLQKKDGDGFFVKGWWKDILHGKIYKELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKRGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSKYDGLTCEQNNPILAGDSLKHTIPHSNGNGYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPVGESVPDQKEEVSKEEEEHNESEEFPLSTKLRNRFTKRQCTNLAHLLTLRSQGIRFGRSTVCGECAREIRWDDLKKK 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05840 1350 Gene3D - 850 1192 IPR027417 -
Vivi1g05840 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 839 IPR027417 -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 380 493 - -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 1273 1300 - -
Vivi1g05840 1350 CDD SF2_C_SNF 982 1125 - -
Vivi1g05840 1350 Pfam SNF2-related domain 607 909 IPR000330 GO:0005524|GO:0140658
Vivi1g05840 1350 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 607 790 IPR014001 -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 326 366 - -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 463 477 - -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g05840 1350 Pfam Helicase conserved C-terminal domain 990 1114 IPR001650 -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 401 423 - -
Vivi1g05840 1350 SMART ultradead3 581 802 IPR014001 -
Vivi1g05840 1350 PANTHER RAD54-LIKE 21 1347 IPR044574 GO:0016887
Vivi1g05840 1350 Coils Coil 107 127 - -
Vivi1g05840 1350 SMART helicmild6 1017 1114 IPR001650 -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 424 447 - -
Vivi1g05840 1350 Gene3D - 558 839 IPR038718 -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 1277 1300 - -
Vivi1g05840 1350 MobiDBLite consensus disorder prediction 343 360 - -
Vivi1g05840 1350 Coils Coil 49 76 - -
Vivi1g05840 1350 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 994 1162 IPR001650 -
Vivi1g05840 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 1180 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05840 Vivi-Chr1 128845689 128866318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05840 595 1144 RAD5 or RAD16-like Gene Family AT1G02670 25.614 7.22e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g05840 SNF2_N 2.9e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05840 K10779 - sind:105161157 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05840 1 128845689 128866318 Vivi1g05840 1 128845689 128866318 ECH