Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05826 ATGACTACTGATCCAAGGGCTACTAAGGGCTATGATGCTTCGAATGACTCAAGGGCTATTAAGGCCTATGATGCTATGAAGGATTTAGGAATCTCTAAGGAAGATGTGAAACCAGTGCTGAGAAATTTGCTTAAAGTGTTCGATAAAAATTGGGAGCTTATTGAAGATGACAACTATCGGGCTCTTATAGATGCGTACTTTGAGTCAAAGGAAGAGTCAAAGGAAGATAAGCCAGAAGAACACAAGAGAAAAGTTCCACTCAATTCTCACGATGGGGAAAGACCAAAACAGAAACTTCACTTGGCAGATAGGGACAACAGTGTTCCATCAGCTGCCAACTCAAGAGAAGTGGTGCTTGTAGAAGACAATGACATACCTGTCAAGACTCTTAAACAGAAATGTATAAAATCATTTCAAACTTCATCATCACACAAACTTCTATCACAGAGAAGATTGAGTGACGATGAAAGGATATCAAGCTTACCTTCCATGGCTGCTAGAGGTCAAAAAAGTTATCCTGGGGCAGCTTCATCTGCAGGGCTTTATTCAGAGGAATCTAGCCATCCTTCTATTCTGATGAAAAATATGTCAAGTGATCACCATCAGAAGAAGATTACAACATCAGGAACTGAGAAGCCTAAGTTTCGTGCTGGAGCTTCTTCTACGAGTTACAATGGCTCACTTGGCGCTTCAAATGGAAATCTTTCTGTCAAATCCCTATCAAAGGGGTCAAGACAAGCTCTTGTTGAAGATAAAAAGAAATTCTTTCGATATGTCGATGACATAACAAAAGGTTCTGAAAATGTTAAAGTTTCATTATTAGATGAAACTGAAAGTGAGGAGTTTCCGAAATTCAATTATATCCCGTCTAATATAATCTATCAGTGTGCCAATGTCAATATTTCACTAGCTCGGATTGCGGATGAGGGTTGCTGTACTAATTGTTCTGGCGACTGTCTTTCCTTATCATTTCCTTGTGCTTGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACTCTTCGAATGGTTTATTAAAAGAAAAGTTTCTCGCAGATTGCATAAATGAACCCCAAGCTCATCATTATGTGTATTGTAAAGAATGCCCAATTGAGAGGTCTAAGAACGAGAGTAAACCTGAACCATGCAGGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTACAACGAGGTTTAAGCCGGAAATTGCAGGTGTTCTTGACTGATCAGGGAAAGGGCTGGGGCGTTAGAAGCTTAGAAGATTTGCCCAAGGGAAGCTTTGTATGTGAATACGCCGGAGAAATTCTAACTAACACAGAATTATATGATAGGATTGTAATGAGTACCGGCAATGACAGACATACATATCCTGTAACGCTTGATGCGGACTGGGGCTCAGAAGTGGGACTAAAGGATGAGGAAGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCACAGATGTAACGATGCAAATCTAATAGATATTCCTGTTGAAGTGGAGACACCTGACCGTCACTATTATCATCTTGCCCTCTTTACAAAAAGAAATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGAATTGACTTTGATGATCATACCCATCCTATCAAAGCATTTAAATGCTGTTGTGGAAGCCCTCTCTGCCGTGATAAGAAACAAAAAGGAACTAGATCAGCAAAGACTAAAAAACTCAAGCATACGAATGCACATTGA 1779 0.403 MTTDPRATKGYDASNDSRAIKAYDAMKDLGISKEDVKPVLRNLLKVFDKNWELIEDDNYRALIDAYFESKEESKEDKPEEHKRKVPLNSHDGERPKQKLHLADRDNSVPSAANSREVVLVEDNDIPVKTLKQKCIKSFQTSSSHKLLSQRRLSDDERISSLPSMAARGQKSYPGAASSAGLYSEESSHPSILMKNMSSDHHQKKITTSGTEKPKFRAGASSTSYNGSLGASNGNLSVKSLSKGSRQALVEDKKKFFRYVDDITKGSENVKVSLLDETESEEFPKFNYIPSNIIYQCANVNISLARIADEGCCTNCSGDCLSLSFPCACSQETGGEFAYSSNGLLKEKFLADCINEPQAHHYVYCKECPIERSKNESKPEPCRGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSRKLQVFLTDQGKGWGVRSLEDLPKGSFVCEYAGEILTNTELYDRIVMSTGNDRHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCNDANLIDIPVEVETPDRHYYHLALFTKRNVSAYEELTWDYGIDFDDHTHPIKAFKCCCGSPLCRDKKQKGTRSAKTKKLKHTNAH 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05826 592 SMART set_7 414 554 IPR001214 GO:0005515
Vivi1g05826 592 FunFam SET-domain containing protein lysine methyltransferase family protein 262 573 - -
Vivi1g05826 592 Gene3D - 10 72 IPR043017 -
Vivi1g05826 592 MobiDBLite consensus disorder prediction 577 592 - -
Vivi1g05826 592 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 18 581 - -
Vivi1g05826 592 Pfam SET domain 426 548 IPR001214 GO:0005515
Vivi1g05826 592 Pfam Pre-SET motif 262 406 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1g05826 592 MobiDBLite consensus disorder prediction 70 110 - -
Vivi1g05826 592 SUPERFAMILY SET domain 269 571 IPR046341 -
Vivi1g05826 592 Pfam Ubiquitin-binding WIYLD domain 14 72 IPR018848 -
Vivi1g05826 592 MobiDBLite consensus disorder prediction 70 103 - -
Vivi1g05826 592 MobiDBLite consensus disorder prediction 180 196 - -
Vivi1g05826 592 ProSiteProfiles SET domain profile. 414 548 IPR001214 GO:0005515
Vivi1g05826 592 MobiDBLite consensus disorder prediction 162 222 - -
Vivi1g05826 592 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 586 IPR025776 -
Vivi1g05826 592 Gene3D SET domain 262 573 IPR046341 -
Vivi1g05826 592 SMART preset_2 259 398 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1g05826 592 MobiDBLite consensus disorder prediction 573 592 - -
Vivi1g05826 592 CDD SET_SETDB-like 283 548 - -
Vivi1g05826 592 ProSiteProfiles Pre-SET domain profile. 311 411 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05826 Vivi-Chr1 128554454 128570222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05826 244 571 Su(var)3-9 homologs AT5G04940 28.161 4.33e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g05826 Pre-SET 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05826 - - psat:127094085 1087.4