Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05806 ATGGGGACTCCAGAGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTAGCTTATATTGACGGACAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTTCCGATGGAAAAAAGGTTGTTGCAAATTTATCAAAAATATTTCCCAAGGATACGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAACTTTCCTATTTGCACGGGCCTGGAGTCCTGCAGAACTTAAAGGCTAGATATGAATTGAATAAAATATATACTTATACAGGAAATGTTTTGATTGCAATAAATCCATTTCAAAAACTGCCTCATATTTATGGTGCACAAATGATGCAACAATACAAAGGAGTGCCAATTGGAGAATTAAGCCCTCATGTATTTGCAATTGCTGGTGTTGCCTATAGGGCAATGGTTAAGGAAGGGAAAAGCAATTCCATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACGGAAACTACAAAACTGCTTATGCAATTCCTGGCTTTCTTAGGGGGTAGAGCTGTAACTGAAGGCAGAACAGTTGAACAACAAATTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAACGAAACTACCACTGCTTTTATCTTCTTTGTGCCGCACCACAGGAGGAAATTGAAAAATACAAATTAGGAAATCCGAAATTGTTCCACTACCTTAATCAGTCACAATGCTATGAACTGGCTGATGTAAATGATGCTCATGAGTATCTTGCCACCTGTAGAGCGATGGGCATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATCTTGGTAATATTGATTTTGCCAAAGGAAAGGAAATTGACTCATCAATTCCAAAAGACGACAAAGCCAAATTCCACTTGAAAACAGCTGCTGAACTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAGCGGAGCCTTGATCCGGGAAGTGCTACTGTCAGTAGAGATGGACTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGCTGGTGGACAAGATCAATAATTCAATTGGACAAGATCCCAATTCTGAATGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTGCATTAATTTCTCAAATGAAAAATTGCAGCAACACTTCAATCAGCACATGTTCAAAACGGAACAAGAAGAATACACAAAGGAGCAGATCGATTGGAGCTACATTGAATTTGAGGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCCGGAGGAATCATTGCTCTTCTCGATGAAGCATGCATGTTTCCAAAGTCAACACATGAAATGTTTGCAAACAAACTTTATCAAATATTTAAGTATAACAAGCGCTTTATTAAGCCAAAATTTTCGCAAGCAGATTTTACTATTGCTCATTATGCTGGAGAGGTGACATACCAATCTGACCAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATTCAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCCGACCTTTTTCCACCACTCCCTGAAGAGACATCCAAATCTTCCAAATTTTCTTCAATAGGTTCTCGTTTTAAGCTACAACTACAGCAACTAATGGAAACATTAAGTTCTACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCACAAGCCTGCAATTTTTGAGAACGTCAACATTAGGCATCAACTTCACTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGTCGCCCTTTTGTTGAATTTGCAAACAGATTTGGTCTCTTTGCCACAGAGGCCACGAAAGCAAACTGTGATGAAAAGTATGTTTGCCAAAAGATTTTGGAAAAGACAGGGCTTAAAGGATATCAGATTGGAAAAACAAAAGTATTCTTGAGAGCTGGTCAGATGGCTGAACTAGATGCTCGGAGAGCTCAAGTACTTGGTAATGCAGCAAAAGTTATCCAACAGAACATACGGACCCATCAAGCTCGGAAACGTTATCTTGCATTGCAAAAGAAGACCATATATTTGCAGTCTCGATGGAGAGGAAGACAGGCATTAAAACTCTATGAGAAAATGAGAAGGGAGGCTGCTGCTGTGAAAATTCAAAAGAACATACGCAGTTATGAAGCTAGGAAGGCATATAAAGAACTTCATATGTCAGTACTTACTATGCAAACAGCTTTAAGAGCCATTGCTGCTCGCAGGGAGTTCAGATTTGGGATACAGACCAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCGGCTTTATATTATAAGAGGCTCAAAAAAGGTTCAATAGTTACACAATGTAGATGGAGAGGACGTTTAGCTACGGGAGAACTTACGAAACTGAAAATGGCTGCAAGACATACTGGTGCACTTCTAGAAGCAAATAGTAAGCTTGAAAAACAAGTAAAGGAACTTACTAGGTGTCTCCAACAGGAAAAAGGTTTAAGGGCTGCAAGAGATACTAGCCCACTTCAAGAAGGCGCACTTCAAGAAGCAAAGTGTAAGCTTGAAAAACAAGTGGAGGAACTTAATTGGCGTCTCCATCTGGAAAAAGGTTTAAGGACAAATCTAGAAGAATACAAAGCACAGGAGATAGCAAAACTGAAGAATTCATTGCAGGAGATGAAGAAAGAGGTTGATGAAACTAATGCTCTTCTCCTCTTGGAGCGAGAAGAGAATGCAAGGAAAGCTATCGAAGTAGCATATCCTGTCAGTAAAGAAGCTAATGTTCTTGTTGAAGATCCTGAGAAGTTTAAGAAACTGAGAATGGAAGTTGAGAGCCTAAAGACTTCGCTCAAGTTAGAGAAACAGAAAGCCCATCACTATGAAAGGAAATATAATGAAGCTAAAATTTGTTGTGAAGAAAGAGGTAAAAGATTAGAGGACACGGAGAAGAAGCTTCGCCAGCTCCAAGAATCAATGACCAAGTTTACTTCTCGGAAGACTTTATAG 3240 0.3957 MGTPENIIVGSHVWIEDPEVAYIDGQVLKINGKDAEIETSDGKKVVANLSKIFPKDTEALPGGVDDMTKLSYLHGPGVLQNLKARYELNKIYTYTGNVLIAINPFQKLPHIYGAQMMQQYKGVPIGELSPHVFAIAGVAYRAMVKEGKSNSILVSGESGAGKTETTKLLMQFLAFLGGRAVTEGRTVEQQILESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKLFHYLNQSQCYELADVNDAHEYLATCRAMGIVGISQKDQEAIFRVVAAILHLGNIDFAKGKEIDSSIPKDDKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSECLIGVLDIYGFESFKLNSFEQFCINFSNEKLQQHFNQHMFKTEQEEYTKEQIDWSYIEFEDNQDVLDLIEKKPGGIIALLDEACMFPKSTHEMFANKLYQIFKYNKRFIKPKFSQADFTIAHYAGEVTYQSDQFLDKNKDYVVPEHSDLLIASKCPFVSDLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLSSTEPHYIRCVKPNNLHKPAIFENVNIRHQLHCGGVLEAIRISCAGYPTRRPFVEFANRFGLFATEATKANCDEKYVCQKILEKTGLKGYQIGKTKVFLRAGQMAELDARRAQVLGNAAKVIQQNIRTHQARKRYLALQKKTIYLQSRWRGRQALKLYEKMRREAAAVKIQKNIRSYEARKAYKELHMSVLTMQTALRAIAARREFRFGIQTKASIIIQARWRCHKAALYYKRLKKGSIVTQCRWRGRLATGELTKLKMAARHTGALLEANSKLEKQVKELTRCLQQEKGLRAARDTSPLQEGALQEAKCKLEKQVEELNWRLHLEKGLRTNLEEYKAQEIAKLKNSLQEMKKEVDETNALLLLEREENARKAIEVAYPVSKEANVLVEDPEKFKKLRMEVESLKTSLKLEKQKAHHYERKYNEAKICCEERGKRLEDTEKKLRQLQESMTKFTSRKTL 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05806 1079 CDD MYSc_Myo11 76 720 IPR036018 -
Vivi1g05806 1079 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vivi1g05806 1079 FunFam Myosin heavy chain 252 307 - -
Vivi1g05806 1079 SMART iq_5 805 827 IPR000048 GO:0005515
Vivi1g05806 1079 SMART iq_5 734 756 IPR000048 GO:0005515
Vivi1g05806 1079 SMART iq_5 853 875 IPR000048 GO:0005515
Vivi1g05806 1079 SMART iq_5 757 779 IPR000048 GO:0005515
Vivi1g05806 1079 SMART iq_5 782 804 IPR000048 GO:0005515
Vivi1g05806 1079 SMART iq_5 830 852 IPR000048 GO:0005515
Vivi1g05806 1079 Gene3D - 735 785 - -
Vivi1g05806 1079 Gene3D - 786 829 - -
Vivi1g05806 1079 Gene3D - 830 882 - -
Vivi1g05806 1079 Coils Coil 891 911 - -
Vivi1g05806 1079 Gene3D - 667 730 - -
Vivi1g05806 1079 Gene3D - 439 623 - -
Vivi1g05806 1079 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Vivi1g05806 1079 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vivi1g05806 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Vivi1g05806 1079 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 FunFam Myosin 2 312 429 - -
Vivi1g05806 1079 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vivi1g05806 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Vivi1g05806 1079 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vivi1g05806 1079 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Vivi1g05806 1079 Coils Coil 1049 1076 - -
Vivi1g05806 1079 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 Coils Coil 954 988 - -
Vivi1g05806 1079 Coils Coil 1014 1041 - -
Vivi1g05806 1079 ProSiteProfiles IQ motif profile. 737 762 IPR000048 GO:0005515
Vivi1g05806 1079 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Vivi1g05806 1079 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Vivi1g05806 1079 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Vivi1g05806 1079 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi1g05806 1079 FunFam unconventional myosin-Va 833 881 - -
Vivi1g05806 1079 Gene3D - 252 310 - -
Vivi1g05806 1079 PANTHER MYOSIN 54 1072 - -
Vivi1g05806 1079 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05806 Vivi-Chr1 128069757 128104556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05806 1 1073 Myosins gene family AT1G54560 72.600 0.0 1613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05806 K10357 - gmx:100816792 1722.6