Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05794 ATGTCGACCACCGCTCAAACCAAGCCCAAGAAAACCGCCGCCGCAAAGAAGCCACTCTCTCATCCTACTTTCGCAGAGATGATAACTGAAGCAATCACAACCCTGAAAGAAAGAACCGGTTCAAGCCAATACGCGATAACAAAATTCATCGAAGAGCAACACAAGGAGTTACCTCCAACCTACCGCAAGCTTGTCCTCCTCCAACTCAAGAAATCCGTTGCTTCCGGAAAGCTCGTCAAGGTGAAAAACTCATTCAAACTCGCACCTGCGGCTGCCAAAACCGCTCCGGCCAAAACCACGGCTGCTACCAAGACCACTAAAGCTGTTGCTAAAGCTGCTGTGAAACCTAAAGTCAAGGCTGCTGTGAAGCCGAAAGCGAAAGCCGCTGCTAAGCCGAAAGCTGTTGTGAAGCCGAAGGCGAAGAGTGTGAAGGCTACACCGGTGAAGAAGGCGGTTGCCAAGAAGGTTGTGAAGAAGGCGAAGAGTGTTAAGAGTCCGGCGAAGAAGGTGAAGAGCGTTAAAACTCCGGTGAAGAAGGCGAAGAAGTGA 549 0.5064 MSTTAQTKPKKTAAAKKPLSHPTFAEMITEAITTLKERTGSSQYAITKFIEEQHKELPPTYRKLVLLQLKKSVASGKLVKVKNSFKLAPAAAKTAPAKTTAATKTTKAVAKAAVKPKVKAAVKPKAKAAAKPKAVVKPKAKSVKATPVKKAVAKKVVKKAKSVKSPAKKVKSVKTPVKKAKK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05794 182 CDD H15 20 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g05794 182 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g05794 182 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g05794 182 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g05794 182 PRINTS Histone H5 signature 143 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g05794 182 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g05794 182 PRINTS Histone H5 signature 165 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g05794 182 PANTHER HISTONE H1 4 173 - -
Vivi1g05794 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g05794 182 MobiDBLite consensus disorder prediction 157 182 - -
Vivi1g05794 182 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g05794 182 Gene3D - 15 100 IPR036388 -
Vivi1g05794 182 SUPERFAMILY "Winged helix" DNA-binding domain 17 98 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05794 Vivi-Chr1 127906961 127907874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05794 22 87 Single Myb Histone (SMH) Gene Family AT1G72740 34.848 7.05e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05794 K11275 - gmx:100810590 134.42