Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05786 ATGCAGATGGAACACGAAGAAAATCACAGGAGATGGAAATGTGAATGGGACAGGGAGAGACTAGAGCTTGATAGAAGATTGAAGGAGCAACTTAGTGGTGATGATGGTGAGAATGATTCTGTTAATCATTCATATGTTTTGGAAGCTCTATCTCGAGCTTTGAGGAAAATCGAGGAGTCTTATCTTGATGTTGCTGATAAGATGGTGATGGAGAATCCAGAACTTGCTTTGATGGGTTCATGTGTTCTTGTAATGTTGATGAAAGGGGAAGATGTTTATGTGATGAATGTGGGAGATAGTAAAGCTGTGTTGGCACAAAAGGCTGAACCTGATTATTGGATTGGGAAAATTCAACAGGATTTGGAGAGGATTAATGAAGAGACGATGCATGATCTTGAATCATGGGAAGATGCTGATAAATTAAATGTTATTCCTAGTTTAAGTACTTTTCATCTTACCAAAGATCATAGATCCAATGTTGAAGAGGATTATCAATTCACACATGGATGCAAGTTTAGTAGAAATTTCAAGGATAGATAA 540 0.3741 MQMEHEENHRRWKCEWDRERLELDRRLKEQLSGDDGENDSVNHSYVLEALSRALRKIEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSKAVLAQKAEPDYWIGKIQQDLERINEETMHDLESWEDADKLNVIPSLSTFHLTKDHRSNVEEDYQFTHGCKFSRNFKDR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05786 179 Pfam Protein phosphatase 2C 54 110 IPR001932 -
Vivi1g05786 179 Gene3D - 1 167 IPR036457 -
Vivi1g05786 179 SUPERFAMILY PP2C-like 40 165 IPR036457 -
Vivi1g05786 179 ProSiteProfiles PPM-type phosphatase domain profile. 1 179 IPR001932 -
Vivi1g05786 179 PANTHER PROTEIN PHOSPHATASE 2C 45 162 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05786 Vivi-Chr1 127775451 127777475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05786 2 165 PP2C-type Phosphatase Gene Family AT1G07630 66.667 1.83e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05786 - - vvo:131644154 353.599