Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05768 ATGACTAGCGTAGCAGACGCTGAGCGCGACAAATACAGCATGATAAATTTTGAAGAAACCGAGTTGAGACTCGGTCTCCCCGGTGGATCAGTGAATGATCACGGCGAGTCACCGGTTAAAAGCAGTTGCGGAAAGAGAGGTTTCTCGGAAACTGCTAACATGGATTTGAAGCTTAATCTTTCTTCAACAAATGATTCTGTTTCTTCTTCTTCAACTATTGCTTCAGCAGCAAACAAAGGCAAAGAGAAAACCTCCACAACCGTTACCGCACCTCCTCGCGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTCAGAAAGAACATAGTGAATGTTCAAAAGAGCAACAATGAATCAGAACCAGAAAAAACCACAAGTGGTGTTGGAAATGGAGCATTTGTTAAGGTGAGCATGGATGGTGCACCTTATCTACGTAAGGTAGACCTTAACTTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCTTTCACAATTGACAACTGTGGGTCCCAAGTCACCAAAGACTTTATGAATGAAAGCAAATTGATTGACCTCTTGAACGGCTCTGATTATGTACCAACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGCGATGTTCCTTGGGAAATGTTTGTTCAATCGTGCAAGCGCCTTCGAATAATGAAAGGTTCCGAGGCGATTGGGCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 756 0.4405 MTSVADAERDKYSMINFEETELRLGLPGGSVNDHGESPVKSSCGKRGFSETANMDLKLNLSSTNDSVSSSSTIASAANKGKEKTSTTVTAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEPEKTTSGVGNGAFVKVSMDGAPYLRKVDLNLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05768 251 MobiDBLite consensus disorder prediction 61 92 - -
Vivi1g05768 251 Pfam AUX/IAA family 19 242 IPR033389 -
Vivi1g05768 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 238 IPR003311 GO:0005634|GO:0006355
Vivi1g05768 251 SUPERFAMILY CAD & PB1 domains 127 232 - -
Vivi1g05768 251 Gene3D - 129 245 - -
Vivi1g05768 251 MobiDBLite consensus disorder prediction 61 95 - -
Vivi1g05768 251 ProSiteProfiles PB1 domain profile. 133 233 IPR000270 GO:0005515
Vivi1g05768 251 MobiDBLite consensus disorder prediction 26 47 - -
Vivi1g05768 251 FunFam Auxin-responsive protein 128 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05768 Vivi-Chr1 127330563 127333431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05768 137 241 B3 DNA Binding Superfamily AT4G23980 34.286 2.99e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g05768 AUX_IAA 2.5e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05768 K14484 - cave:132171332 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05768 1 127330563 127333431 Vivi1g05768 1 127330563 127333431 ECH