Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05767 ATGGCTGGTAATTGTTCGGAGGGATTAGGAGATGATTTTTTTGAACAGATCTTAGCTGTGCCTGAAAGTGGAGTTGGTTATGGGAGGAACAATACAGGCATGGATCATGTTGGAGGTGTGTTGCAACTGGGGTCCAATCCTGCTAGAGGAGGAGGAATAATGCCGTTGGGGTTGAATTTGGAACAAACTCATCATGGGTTTCTCAGACACCAAGATGCTGCTGCAACACGGTTTGTTGACAACGTTGTTGATGTTGAAGCCAACATTACCATCAATAACAACAACAATAACAACAACCATCAGCACCATCATCTTCGTCTTCATGATGTCAATACCAATACTGCTTCTTCCTCACCCTCTTCTACTCCTGGAATCAACGGAATCATCAACGATAGGGATTCGATGCAGCACATGAGGGGTTTGTTTTCAACGTTTGGACAAATGCATACTCCAACTCATGCTCAACCTGTACGCCCCATGCTACCATCTCCAACTCCTCAACCACAGCTTCATCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCAACCAAATCCAGCATCTGTTACTGCCATGCCACAACCACCTGGCATCCGTCCAAGAGTGCGAGCAAGAAGAGGCCAAGCCACGGATCCCCACAGCATCGCTGAGCGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTACAGGAATTAGTCCCCAGCATCAACAAGACGGACAAAGCGGTTATGCTCGACGAAATTGTTGATTATGTGAAGTTCCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAACTTGTAGCTGATGTTCCTGTTTCTGCAGTGGAGGGGGACGACATAGAAGGCGGAACCAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACCGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCCATGCAACTTCTCCAATCAAAAGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGACTCATCATCAAACATCAAGCCTGAATCAAACAACCACACATAG 1098 0.469 MAGNCSEGLGDDFFEQILAVPESGVGYGRNNTGMDHVGGVLQLGSNPARGGGIMPLGLNLEQTHHGFLRHQDAAATRFVDNVVDVEANITINNNNNNNNHQHHHLRLHDVNTNTASSSPSSTPGINGIINDRDSMQHMRGLFSTFGQMHTPTHAQPVRPMLPSPTPQPQLHLHHQHQQHFQSQQPNPASVTAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSSNIKPESNNHT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05767 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 268 IPR036638 GO:0046983
Vivi1g05767 365 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 104 343 - -
Vivi1g05767 365 FunFam Transcription factor bHLH66 206 271 - -
Vivi1g05767 365 MobiDBLite consensus disorder prediction 176 213 - -
Vivi1g05767 365 SMART finulus 215 264 IPR011598 GO:0046983
Vivi1g05767 365 Pfam Helix-loop-helix DNA-binding domain 214 258 IPR011598 GO:0046983
Vivi1g05767 365 Gene3D - 204 266 IPR036638 GO:0046983
Vivi1g05767 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05767 Vivi-Chr1 127207581 127211617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05767 183 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 75.824 7.77e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g05767 HLH 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05767 - - gmx:100807570 396.356