Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05752 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTTGTGAGGCATAAACATGAGAAGAAAAAATATGTGTTGAAGAAGATTAGACTTGCCCGCCAAACGGAGCGTTCTCGCAGATCCGCACATCAGGAGATGGAACTTATCTCTAAATTGCGGAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTACTGTGAGGGCGGAGATATGGCGGAAACTATAAAGAAGACTAATGGTGTTCTGTTTCCTGAGGAGAAACTTTGCAAGTGGCTTGTTCAACTTCTTATGGCACTTGAGTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGCGACATCCGTCTGGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTCGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCATTGGGATGTTGTATATATGAAATGGCAGGACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGATTAGTAAGTCCATAGTGGCTCCACTACCAACAAAGTATTCTAGTTCATTTCGAAGTCTGGTGAAAAGCATGCTGCGAAAAAATCCAGAGCTGAGACCCAGTGCTTCAGAGCTTCTTGCGCACCCACATCTTCAACCTTATGTTCTAAAGATCCATCTGAAACTCAATAGCCCCAGGCGAAGTACATTGCCTGTTCATTGGCGAGAGTCAAAGTACACAAAGAAAACTAGATTTTTAGATCCAAAAGATGATACTGTTACCTTCTCTAAGAATAAACGATATTCTTACAGTAATGACCGGGCTCTAAATCCTAGTGTGTCTGGAGCTGATCAAGATTCTGTATGTTCTACCCTAGAAATAGGTTGTACTCCTGATCATTTGAACTCAAGAATGGCAGAATTATGTACAGGTAATAGCCGTGACATGAAGTCAGTCCATAAACCTGCTGTTTCCAGAACTTCTAGTATTGCCAAGGCTCCTAAGTTCAATTCACCAAAAGTTTCCGGCACCAACAGGAAATCAATGGAACCCTCAAACAATCGCAAGGTGGTAAAGCAAACTCTTCCTGTTTCACAAAACATCTCAAAATCTGCTCATACAAATCGCAGAGCATCATTTCCATTGTCAACAAGGAGTGGTATTCAGGAGCCTCCTTGCAGGCAGAGTGTTGGTTTACTTAGCCGTGTGTCTTCACCAGATATCTCAGTCAACTCTCCCCGAATCGATAGGATAGCCGAATTCCCATTAGCATCATATGAAGATTCTTTATTCCCAGTCAACAAAACGTCAACCTCTGGACAAGGTTCTTCGGGATTCCCACCTCGTGACAATTATTCAACTGTGATAGACAAATGCACAATAGAGGTATGCGATAGAGCCTCTACAAATCCTAAAAGTACCGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATTCACAAGGATAAAAGCGGTTCCTCTGATCAAAATGCAACGGCTGGTGCATCAAGCTACACATCTTCAGACTTGCAGCGGCGACAGTTTGACACTTCATCTTTCCAACAAAGGGCAGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTCCAGCAAGCAAGGTATGATGAACTTGGAGTTTTGTTGAAACCATTTGGTCCCGGCAAGGTTTCCCCAAGAGAAACTGCCATCTGGTTGAGCAAAAGCTTCAAAGGGAATTCTAACACCACAGAAGAATCCCCGTAA 1875 0.4235 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAETIKKTNGVLFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGHKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLAHPHLQPYVLKIHLKLNSPRRSTLPVHWRESKYTKKTRFLDPKDDTVTFSKNKRYSYSNDRALNPSVSGADQDSVCSTLEIGCTPDHLNSRMAELCTGNSRDMKSVHKPAVSRTSSIAKAPKFNSPKVSGTNRKSMEPSNNRKVVKQTLPVSQNISKSAHTNRRASFPLSTRSGIQEPPCRQSVGLLSRVSSPDISVNSPRIDRIAEFPLASYEDSLFPVNKTSTSGQGSSGFPPRDNYSTVIDKCTIEVCDRASTNPKSTDDWQGIKRSMLKEIHKDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKGNSNTTEESP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05752 624 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vivi1g05752 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vivi1g05752 624 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vivi1g05752 624 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 574 - -
Vivi1g05752 624 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05752 624 MobiDBLite consensus disorder prediction 535 555 - -
Vivi1g05752 624 Gene3D Transferase(Phosphotransferase) domain 1 86 320 - -
Vivi1g05752 624 SUPERFAMILY Protein kinase-like (PK-like) 1 303 IPR011009 -
Vivi1g05752 624 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi1g05752 624 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05752 624 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05752 624 CDD STKc_Nek 3 258 - -
Vivi1g05752 624 MobiDBLite consensus disorder prediction 374 394 - -
Vivi1g05752 624 MobiDBLite consensus disorder prediction 408 431 - -
Vivi1g05752 624 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vivi1g05752 624 MobiDBLite consensus disorder prediction 529 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05752 Vivi-Chr1 126676098 126681480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05752 10 259 MAP Kinase Kinase Kinase AT1G53570 32.941 5.48e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi1g05752 Pkinase 6.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05752 K08857 - gmx:100804898 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05752 1 126676098 126681480 Vivi1g05752 1 126676098 126681480 ECH
Vivi1g05752 1 126676098 126681480 Vivi1g06454 1 146279932 146284041 PCT