Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05748 ATGTTTGATGGAGTCCCAGACCAATTCCACCAATTCATAACTCCAAGAACCTCTTCTTCATCACTACCTCTTCATTTACCTTTCCCTCTTTCAACACCACCAAATAACAACAACAACAACAACACCTTCCCCACTTTTGATCCTTATAACCATCAACTACCACTCCAACTTCAACCAAACAATCTCTTGCACCCATTACACCCTCACAACAACAAAGATGAACCAAAAGACCAAACCACTCCTCCTTCGATCAACAACTTCCAAATTGAAAGAGATCAACGACAAATACTTCCTCAACTCGTTGATCCTTGGACCAACGACGAAGTTCTTGCACTCCTGAAGATCAGATCCAACATGGAGAATTGGTTCCCGGATTTCACCTGGGAGCACGTATCAAGGAAGCTAGCTGAGGTTGGATTTAAACGTAGTGCAGAGAAATGCAAAGAGAAATTTGAAGAAGAGAGTAGATTTTTCAACAATATTAATATTAATAATAATCAGAATCAGAATCAGAATAATTACGGTAAGAATTTTCGGTTTGTTACTGAACTTGAAGAGGTTTATCAAGGTGGGAGTGGTGGTGAGAATAAGCGGAACGAGGTGCAGGAGAAGATGAGGAGTGGATCGAATGATGATGATGATTCGAGGAGCGATGAGGATTTGGTGATGAAGAAAGATGAAGATGAGGTGTTTGAGAAAAGTACTAGAAATGAAGAGAGGAAGAGGAAAAGAGGTGGTGATAGATTTGAAGTGTTCAAGGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAGGAGATGCATAACAAGCTTATTGAGGATATGATTAAAAGAGATGAAGAGAAATTTAGTAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACAAGAACAAGCTATTGCTGGTGATAGACAAGCCAGTATAATTCAGTTCTTGAATAAATTCTCATCAACAACAAATTCTTCTGCAATTTTAGCTTCACTTCAAAGCTTTGGAATCGGAAAAGAAGACAAATCCAAGGTAATTACACCTAAACATTTCTCAAATTCTACCACATTGCACTCACAAAACCCTAATCCTGAAACTCATGACAAAACTCTTCAACCAACATCTGAAAACCCTAGCTCAACCCTTCCTTCTTCTTCTACTACTTTAGCTCAACCTCGCAAATATACCGTCGGCGGCGAGAAAGAGGATATTGGTAGAAGATGGCCAAAAGATGAAGTGCTTGCATTGATAAACTTGAGGTGCAATTACAACAACAATGAAGAAAAGGAAGGAAACAACAACAACACCAACAAAGCACCACTATGGGAGAGAATATCTCAAGGAATGTTGGAGCTAGGATACAAAAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAGAAAAACAAAGGACAATGCTAATAGGAAAAGGTCACTTGATTCAAGAACATGTCCTTATTTTCATCTATTGAGCAATCTCTATAACCAAGGTAAACTTGTTCTACAATCTGAAAAGAATGAGAGCAATAACAACATGAATCTGCCTGAAGAAAATGTTGTTCAAGAGAAGAAAGCTCCACAAGATGAAAACATTGGTGGTGATGGTGGTGAGTCTTCTGATCAAGTGGGGCCTGCATGCTGGTAG 1689 0.3896 MFDGVPDQFHQFITPRTSSSSLPLHLPFPLSTPPNNNNNNNTFPTFDPYNHQLPLQLQPNNLLHPLHPHNNKDEPKDQTTPPSINNFQIERDQRQILPQLVDPWTNDEVLALLKIRSNMENWFPDFTWEHVSRKLAEVGFKRSAEKCKEKFEEESRFFNNININNNQNQNQNNYGKNFRFVTELEEVYQGGSGGENKRNEVQEKMRSGSNDDDDSRSDEDLVMKKDEDEVFEKSTRNEERKRKRGGDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKFSREEAWKKQEMEKMNKELELMAQEQAIAGDRQASIIQFLNKFSSTTNSSAILASLQSFGIGKEDKSKVITPKHFSNSTTLHSQNPNPETHDKTLQPTSENPSSTLPSSSTTLAQPRKYTVGGEKEDIGRRWPKDEVLALINLRCNYNNNEEKEGNNNNTNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDNANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSEKNESNNNMNLPEENVVQEKKAPQDENIGGDGGESSDQVGPACW 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05748 562 Gene3D - 104 159 - -
Vivi1g05748 562 Gene3D - 417 483 - -
Vivi1g05748 562 Coils Coil 294 314 - -
Vivi1g05748 562 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Vivi1g05748 562 Pfam Myb/SANT-like DNA-binding domain 415 506 IPR044822 -
Vivi1g05748 562 Pfam Myb/SANT-like DNA-binding domain 102 184 IPR044822 -
Vivi1g05748 562 PANTHER FI21293P1 53 540 - -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 189 244 - -
Vivi1g05748 562 CDD GT1 415 485 - -
Vivi1g05748 562 FunFam Trihelix transcription factor GT-2 104 160 - -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 522 562 - -
Vivi1g05748 562 ProSiteProfiles Myb-like domain profile. 416 478 IPR001005 -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 361 402 - -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 13 65 - -
Vivi1g05748 562 SMART sant 413 480 IPR001005 -
Vivi1g05748 562 SMART sant 100 157 IPR001005 -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 197 244 - -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 361 411 - -
Vivi1g05748 562 MobiDBLite consensus disorder prediction 13 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05748 Vivi-Chr1 126452569 126455153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05748 1 511 Trihelix Transcription Factor Family AT5G28300 40.753 1.15e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g05748 Myb_DNA-bind_4 6.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05748 - - tpra:123903108 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05748 1 126452569 126455153 Vivi1g05748 1 126452569 126455153 ECH
Vivi6g05060 6 154889649 154892115 Vivi1g05748 1 126452569 126455153 PCT