Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05747 ATGGCTGATTCTTCAACCAATCCAAAGGATCATCAAAATTCACGTCTCTACCATCCCTACCAGCACCTCAACATTCCCGTCGATAAACTCTACAACCTCCCCACCTCACCGGAGCATCTTTTCCCCGAAGAAGCCTCCAGAAAGCACCGTTCATGGGGCGACAACCTCCAGTACTACACCGGAACCGGATACCTCTCTGGCTCGATCATCGGAGGAACAAGAGGAACCATTGAAGGTCTCAAGGCTGCTGAGGCAGGTGACTCTTTTAAAATCCGAGTCAACCGTGTTCTTAACTCGGGTGGTCAAGGAGGTCGTAGACTCGGTAACTCGCTTGGGGTTTTGGGGTTGATCTTTGCAGGATTGGAGAGTGCTATGATCCATGTTAGGGATAAGGATGACTTGGTTAATAGCGCGGTTGCTGGACTCGGTACCGGAGCGCTTTATAAGGCTGCGGCGGGGCCTCGGTCGGCTGCTATTGCTGGCGCTCTCGGTGGAATTGCGGCGGCTGTGGCAGTTGCCGGGAAACAAGCTTTGAAACGATACATTCCAATTTAG 555 0.5225 MADSSTNPKDHQNSRLYHPYQHLNIPVDKLYNLPTSPEHLFPEEASRKHRSWGDNLQYYTGTGYLSGSIIGGTRGTIEGLKAAEAGDSFKIRVNRVLNSGGQGGRRLGNSLGVLGLIFAGLESAMIHVRDKDDLVNSAVAGLGTGALYKAAAGPRSAAIAGALGGIAAAVAVAGKQALKRYIPI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05747 184 PANTHER TIM23 26 172 IPR045238 GO:0022857
Vivi1g05747 184 Pfam Tim17/Tim22/Tim23/Pmp24 family 58 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05747 Vivi-Chr1 126440421 126441246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05747 3 180 Chloroplast and Mitochondria Gene Families AT1G17530 55.556 2.08e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05747 K17794 - gmx:100803835 275.404