Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05736 ATGGCATTCTTCCAGAACCGCGTCGTTTTCCCGAAAGAGGAATATCCTGAGATCTTAGAGGAATACGAATTGGAAGAAGAGGAGGAAGAAGAAGACGACTACGTTTTAGAGCCACACGAGTATCTCACCAACAACGAAACCGAACAATCTCATTCAACCTCCTCCGCCGCTCCCACCGTCATCCTAGCCTTACCGAACGCCGCAACGGCTGTTGCTGCTGAGTCGCCTGAGCCGAAACGGCAGCGAATTGACCAGGTGGAGGAGAAGAAGTCGTCCATGGAGGATTCGAGGAAATTGTTTCAGCGGCTTTGGACTGACGAGGATGAGATCGTAATCTTGCAAGGGTTTCTGGATTACAACGCGAATCGAGGATCGGCTTATCATAACGACTCGGCGTCGTTCTATGATCAGATTAAGTCGAAGCTTCAGCTCGATTTCAACAAGAGCCAGCTTGTTGATAAATTGCGAAGGTTGAAGAAGAAGTATCGGAACCTTCTCCAGAAATTCGATTCTGGTAAGGAGTTTTTCTTCAAAACCCCGCATGAACAAGCTACGTTCGAAATTTCACACAAAATCTGGAACATTGTGACTCCAATTGGGATTCCTGTTGAAGATGACGGCGAAATTAACCCTAACCCTAACCGTAGTCCAAATTCAGGTCATACTACGCCGGTGAAGATTGAGCCACCGGTAATTGAGAAGAAAAGGAAGGGATCCCGAACGGCGGCAACGGAGGAGAAGCAACAGCAGCGGAAATTGAATGATAATTCAGCAATGATGAATAAAGATAATCATAATAATTCTACTAACAACAATAGTAGCAATGCTGAAGATGAAAGTGGAGATAAGAGTAATGTATCTGGATTGATTGAAGAGACTGTGAAGAGTTGTTTGACTCCATTCTTGAAGGAGTTAACCGGTAGTAGCAACATGGGGAGTCCTTTTGGTTATGGAGGGAGAGGGTTTGGAGGTGGAGGTTTGTCATTGAATCCGATGCCATTTAGTTTTCTGAATATGGGGAATGGGGAAAAGGTGGGAGATGAAAAGTGGAAGAAGCAACAGATTTTGGAGCTGGAAGTGTATTCTAAGCGATTGGAGCTAGTGCAGGATGAGATCAAGGTTGCTTTGGAGGAGTTGAGGTCAAATGCGGGAGCTGGAGCTGGAGGAAGCAGAAAATTTTAA 1182 0.4543 MAFFQNRVVFPKEEYPEILEEYELEEEEEEEDDYVLEPHEYLTNNETEQSHSTSSAAPTVILALPNAATAVAAESPEPKRQRIDQVEEKKSSMEDSRKLFQRLWTDEDEIVILQGFLDYNANRGSAYHNDSASFYDQIKSKLQLDFNKSQLVDKLRRLKKKYRNLLQKFDSGKEFFFKTPHEQATFEISHKIWNIVTPIGIPVEDDGEINPNPNRSPNSGHTTPVKIEPPVIEKKRKGSRTAATEEKQQQRKLNDNSAMMNKDNHNNSTNNNSSNAEDESGDKSNVSGLIEETVKSCLTPFLKELTGSSNMGSPFGYGGRGFGGGGLSLNPMPFSFLNMGNGEKVGDEKWKKQQILELEVYSKRLELVQDEIKVALEELRSNAGAGAGGSRKF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05736 393 PANTHER BNAANNG10740D PROTEIN-RELATED 24 378 IPR007592 GO:0006355
Vivi1g05736 393 MobiDBLite consensus disorder prediction 204 284 - -
Vivi1g05736 393 MobiDBLite consensus disorder prediction 71 90 - -
Vivi1g05736 393 MobiDBLite consensus disorder prediction 228 252 - -
Vivi1g05736 393 MobiDBLite consensus disorder prediction 253 284 - -
Vivi1g05736 393 Pfam Protein of unknown function, DUF573 100 194 IPR007592 GO:0006355
Vivi1g05736 393 Coils Coil 148 168 - -
Vivi1g05736 393 Coils Coil 358 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05736 Vivi-Chr1 126189822 126191361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05736 52 386 GeBP Transcription Factor Family AT5G28040 44.353 3.64e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vivi1g05736 DUF573 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05736 - - psat:127097903 592.423