Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05714 ATGGGTTGTGTGATTAGCCGAGAAGTGGAATCGGGTATTGTTTCGGAGGTGAGGGAGGAGAATAATTTGAGAGTTGAGTCGAGTAGGAAGGTTGAAGAAGTGTCGACGAGTAGAGGTGATGGGAATGTGGTTGAGGTTCATGTGAAGAAGGTTAAGGAGAAGGAAGAGAAGAGTGAGGGCGATGGGATTCAGCGGGCAAAGGGTGAAAGAAGAAGATCGAAGCCAAATCCAAGGTTAAGTAACCTGCCGAAGCATTTGCAGGGGGAGCAAGTGGCAGCTGGATGGCCGTCTTGGCTTACAGCGGTTTGTGGGGAAGCTCTTAATGGGTGGATTCCGCGAAAGGCTGATACATTTGAGAAAATAGATAAGATCGGTCAAGGAACATATAGTAATGTTTATAAAGCTAAAGATACGTTAACGGGTAAGATTGTTGCATTGAAAAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCCTGGAGTTTGTATCTGGTGTTTGATTACATGGTACATGATTTAGCTGGACTTGCCGCAAGCCCTGACATCAAGTTTACAGAGCCTCAGGTAAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGGCATGTACTTCACCGCGATATTAAAGGATCAAATCTTCTGATTGACAGCGAAGGAGTACTCAAGATTGCCGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCAATGACTAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTGGGTGCCACCGATTATGGTGTGGGTGTGGATCTCTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCCGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGTTCACCTTCTGAAGAGTATTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTTAAACCTCGAGAGCCATACAGAAGAAGCATAAGAGATATTTTTAAAGAATTTCCACCTTCTGCTCTGCCCCTCGTGGATACACTTCTTGCAATCGATCCGGTAGAACGGAAGAGTGCCTCAGATGCTCTGAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAATTATCCTCCGACCAAGGAAATGGATGTTAAACGCCGCGATGATGAAGCAAGAAGATCAAGAGCTGCTGCCAAAGCTCGAGTTGAAGGGGGAAAGAAGCATCATCGGACACGTGATCGTGCTGTAAAAGCTGCTCCTGAAGCCAATGCTGAGCTTCAACACAATATTGATAGAAGGCGTCTAATAACTCATGCTAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTCGGATTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTCTCTTTGGATTCAATGTCATATACTTTTTCAAAGGAACCATTTCAAGCTTGGTCAGGTCCCATAGGTAATACTACCGGCAACGGTTTCACAAAGCGGAAGAAAAACACTGCGAATACTGCCAACGATGCATTGGATTTATCAAAACCATATAAAGGAACCCTCAAGGATAAGAGTAAAGGAAAGAAAATCATAGCTTAA 1749 0.4362 MGCVISREVESGIVSEVREENNLRVESSRKVEEVSTSRGDGNVVEVHVKKVKEKEEKSEGDGIQRAKGERRRSKPNPRLSNLPKHLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKSKLPNATLFKPREPYRRSIRDIFKEFPPSALPLVDTLLAIDPVERKSASDALRSEFFTTEPYACDPSSLPNYPPTKEMDVKRRDDEARRSRAAAKARVEGGKKHHRTRDRAVKAAPEANAELQHNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVSLDSMSYTFSKEPFQAWSGPIGNTTGNGFTKRKKNTANTANDALDLSKPYKGTLKDKSKGKKIIA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05714 582 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05714 582 Gene3D Transferase(Phosphotransferase) domain 1 201 442 - -
Vivi1g05714 582 FunFam probable serine/threonine-protein kinase At1g54610 105 200 - -
Vivi1g05714 582 CDD STKc_CDK9_like 118 402 - -
Vivi1g05714 582 FunFam probable serine/threonine-protein kinase At1g54610 201 442 - -
Vivi1g05714 582 MobiDBLite consensus disorder prediction 421 442 - -
Vivi1g05714 582 MobiDBLite consensus disorder prediction 537 560 - -
Vivi1g05714 582 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Vivi1g05714 582 MobiDBLite consensus disorder prediction 48 76 - -
Vivi1g05714 582 SUPERFAMILY Protein kinase-like (PK-like) 112 409 IPR011009 -
Vivi1g05714 582 MobiDBLite consensus disorder prediction 566 582 - -
Vivi1g05714 582 PANTHER CELL DIVISION PROTEIN KINASE 116 406 - -
Vivi1g05714 582 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Vivi1g05714 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vivi1g05714 582 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05714 582 MobiDBLite consensus disorder prediction 48 87 - -
Vivi1g05714 582 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05714 582 MobiDBLite consensus disorder prediction 410 462 - -
Vivi1g05714 582 MobiDBLite consensus disorder prediction 537 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05714 Vivi-Chr1 125789377 125796541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05714 110 440 Core Cell Cycle Gene Families AT5G10270 52.161 2.27e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi1g05714 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05714 K08819 - gmx:100817289 947.577