Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05684 ATGACAAGGGGTAACGAGATATGTGTTGATGGTGACAGTAAAGAACTTACTCAGTGTTTGTGGGATGGGAAAAACAGCTTAAAAAAAGGAGTTGCAGGTGAGGGTGATGAAGTGGAATGTAATGGAGTAGCTGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGAGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGCGCAGTTATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGATTGTACCCGCCATATTGTCACTGCATTGCTTTGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATATTATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGGCCACACAACTCGGAAAAATGTTCCAGTGATTATGATGTCATCTCACGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGACAACAATTCGGGAAGCAATGACGAGCAAGATAATGAAATTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGACTCTCAGTGGGAACAGATAGCTGAGTGTCCTGACAGCACTTGTGCTCAAGTTGTTCATTCCAATACTGAAATATGCAGGGGCAAGATGGTTCCTCCAGTCATAAAGGAGTGTCCAGAGCAAAAGGAACAAATAGGCCCCTCTAAATTCAATGAGCAAATTATTAGAGGACATCAGGAGCTTAATTGTGAGAATCAATCTGGCAAGCTAAGATGCAAAGGGCTTTCATTATCTGATGGTGTTACTAGCACTTCTGATTCTCGAATGCGAAGTGGAGAAATTGAAGCTCTAAATAGAATACCCAAGTCCTCAGATATTTACAACAAAGGTACTAATAATGACGAGGAGTTGCCATCTCTTGAGCTCAGTTTAAAGAGGCCCAGAGAAGTTAAAGAAGTTGGTACTACAAGTCAGGATGAAAGGAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAAGTACAATGCAGCCCTTAATGCTAAGAAGTCTCCTACGAGATGTGTTGGAAGTAACTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCCTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGTGGTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCATTTACCAAGTCTGCAGTTATAAGTGAGCCAGCGGTGGCATCAACAACCAAATTTGCGTACAAAACATCTGCTTTCCAGCCCATAAAGAGCAGCCTCATGTATACCTCTCAACAGGTGGTCTTGCATAATAATGAAGATACGACAGCAGCAATGCTGGCACCACCTAAAATTGACACTGATAAGGTTTCTGTTACTCAGGATTTTCATCACCATTATGAAAACCACAACAATGTTGCAAACATGCAGCATCAGTTGCCACCTGAGAATGATGCTGAATCATTTAAAAAAATGACGGCTGTTTCTCCACACTGCGGTGGGTCATCAATTGTGGTTGAAGTGCTAGTTGAAGGTAATATGGGAAATTACAGTATCAATAGAAGTGCTTCAGGCAGCAACGTTGAAAGTAATGGACAAAATGGGAGCAGCACTGCAATTAATACTGGAGGGACAAACTTAGAAAGCAACAATGGACTAGCTGGGAATAGTGGTAGTGGTGATGCTAGTGGGAATGGAAGTGCCATCAGAATAGATCCAAACAAAAATTCTCGAAGGGAAGCAGCACTAACAAAATTTCGCCAAAAAAGAAAGGAGAGAAAAGAGAAGTGCTTTCATAAACAGGTTCGATATGAGAGCAGGAAGAAATTAGCTGAACAACGACTACGATATCGTGGACAATTTGTGCGAAAGTCTTCAAACAATGATGCCGGTGAGGCAACAGATAGTTGA 2217 0.4118 MTRGNEICVDGDSKELTQCLWDGKNSLKKGVAGEGDEVECNGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAVICWERFLHIRSLKVLLVEYDDCTRHIVTALLCNCSYEVIEAANGLQAWKILEDLTNHIDIILTEVAMPGLSGIALLYKIMGHTTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNEILGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSDSQWEQIAECPDSTCAQVVHSNTEICRGKMVPPVIKECPEQKEQIGPSKFNEQIIRGHQELNCENQSGKLRCKGLSLSDGVTSTSDSRMRSGEIEALNRIPKSSDIYNKGTNNDEELPSLELSLKRPREVKEVGTTSQDERNVLRHSDLSAFSKYNAALNAKKSPTRCVGSNSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKSAVISEPAVASTTKFAYKTSAFQPIKSSLMYTSQQVVLHNNEDTTAAMLAPPKIDTDKVSVTQDFHHHYENHNNVANMQHQLPPENDAESFKKMTAVSPHCGGSSIVVEVLVEGNMGNYSINRSASGSNVESNGQNGSSTAINTGGTNLESNNGLAGNSGSGDASGNGSAIRIDPNKNSRREAALTKFRQKRKERKEKCFHKQVRYESRKKLAEQRLRYRGQFVRKSSNNDAGEATDS 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05684 738 MobiDBLite consensus disorder prediction 240 282 - -
Vivi1g05684 738 MobiDBLite consensus disorder prediction 625 681 - -
Vivi1g05684 738 Pfam CCT motif 681 726 IPR010402 GO:0005515
Vivi1g05684 738 ProSiteProfiles CCT domain profile. 684 726 IPR010402 GO:0005515
Vivi1g05684 738 MobiDBLite consensus disorder prediction 625 674 - -
Vivi1g05684 738 SUPERFAMILY CheY-like 83 209 IPR011006 -
Vivi1g05684 738 MobiDBLite consensus disorder prediction 441 493 - -
Vivi1g05684 738 FunFam Two-component response regulator-like PRR37 85 243 - -
Vivi1g05684 738 SMART REC_2 85 200 IPR001789 GO:0000160
Vivi1g05684 738 ProSiteProfiles Response regulatory domain profile. 86 204 IPR001789 GO:0000160
Vivi1g05684 738 MobiDBLite consensus disorder prediction 209 282 - -
Vivi1g05684 738 PANTHER TWO-COMPONENT RESPONSE REGULATOR 85 284 IPR045279 GO:0009736
Vivi1g05684 738 MobiDBLite consensus disorder prediction 209 226 - -
Vivi1g05684 738 Pfam Response regulator receiver domain 87 198 IPR001789 GO:0000160
Vivi1g05684 738 Gene3D - 84 256 - -
Vivi1g05684 738 CDD psREC_PRR 87 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05684 Vivi-Chr1 125257965 125277584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05684 163 728 Response Regulator Gene Family AT5G02810 44.231 1.78e-100 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi1g05684 Response_reg 3.6e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05684 K12129 - gmx:100796933 1035.79